ECOD: domain e3egdB5

Domain ID e3egdB5

A: few secondary structure elements
X: Rubredoxin-like
H: Rubredoxin-related
T: Rubredoxin-related
F: zf-Sec23_Sec24

UID:	001596835
Type:	Automatic domain
Parent:	e1pd0A4
Range:	B:416-500
Ligands:	ZN
PDB:	3egd
PDB Description:	Protein transport protein Sec24A
UniProt:	O95486
Hsap BLAST neighbor:	O95486
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e3egdB5

Domains in the same chain:

Download Pymol

Domains in the same PDB:

e3egdA13	A:3-50,A:394-517	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Common fold of diphtheria toxin/transcription factors/cytochrome f
e3egdA15	A:50-125	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e3egdA14	A:126-393	HAD domain-like	HAD domain-related	vWA-like
e3egdA11	A:518-620	ERP29 C domain-like	Helical domain of Sec23/24	Helical domain of Sec23/24
e3egdA12	A:621-723,A:746-764	Gelsolin-like	Gelsolin-like	Gelsolin-like
e3egdB3	B:346-415,B:744-838	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Common fold of diphtheria toxin/transcription factors/cytochrome f
e3egdB5	B:416-500	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e3egdB1	B:501-743	HAD domain-like	HAD domain-related	vWA-like
e3egdB4	B:839-943	ERP29 C domain-like	Helical domain of Sec23/24	Helical domain of Sec23/24
e3egdB2	B:944-1093	Gelsolin-like	Gelsolin-like	Gelsolin-like
e3egdC1	C:1-157	Profilin-like	profilin-like	profilin-like

Structural contacts of domain e3egdB5 of H-group "Rubredoxin-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3egdC1	B:X,Y,Z->C:x,y,z	profilin-like	Interaction Interface Pymol
e3egdC1	B:-X+1/2,Y-1/2,-Z-1->C:x,y,z	profilin-like	Interaction Interface Pymol