Domain ID e3ekmB3

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  • A: a+b complex topology
  • X: Diaminopimelate epimerase-like
  • H: Diaminopimelate epimerase-like
  • T: Diaminopimelate epimerase-like
  • F: DAP_epimerase
UID: 001273586
Type: Automatic domain
Parent: e2gkeA1
Range: B:25-156
Ligands: ZDR
PDB: 3ekm
PDB Description: DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC
UniProt: Q9LFG2
Species: Arabidopsis thaliana

Structure of domain e3ekmB3

Domains in the same chain:

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e3ekmB3 B:25-156 Diaminopimelate epimerase-like Diaminopimelate epimerase-like Diaminopimelate epimerase-like
e3ekmB4 B:157-311 Diaminopimelate epimerase-like Diaminopimelate epimerase-like Diaminopimelate epimerase-like

Domains in the same PDB:

e3ekmA5 A:25-156 Diaminopimelate epimerase-like Diaminopimelate epimerase-like Diaminopimelate epimerase-like
e3ekmA6 A:157-311 Diaminopimelate epimerase-like Diaminopimelate epimerase-like Diaminopimelate epimerase-like
e3ekmB3 B:25-156 Diaminopimelate epimerase-like Diaminopimelate epimerase-like Diaminopimelate epimerase-like
e3ekmB4 B:157-311 Diaminopimelate epimerase-like Diaminopimelate epimerase-like Diaminopimelate epimerase-like
e3ekmC5 C:25-156 Diaminopimelate epimerase-like Diaminopimelate epimerase-like Diaminopimelate epimerase-like
e3ekmC6 C:157-311 Diaminopimelate epimerase-like Diaminopimelate epimerase-like Diaminopimelate epimerase-like
e3ekmD3 D:11-156 Diaminopimelate epimerase-like Diaminopimelate epimerase-like Diaminopimelate epimerase-like
e3ekmD4 D:157-311 Diaminopimelate epimerase-like Diaminopimelate epimerase-like Diaminopimelate epimerase-like
e3ekmE3 E:25-156 Diaminopimelate epimerase-like Diaminopimelate epimerase-like Diaminopimelate epimerase-like
e3ekmE4 E:157-311 Diaminopimelate epimerase-like Diaminopimelate epimerase-like Diaminopimelate epimerase-like
e3ekmF3 F:11-156 Diaminopimelate epimerase-like Diaminopimelate epimerase-like Diaminopimelate epimerase-like
e3ekmF4 F:157-311 Diaminopimelate epimerase-like Diaminopimelate epimerase-like Diaminopimelate epimerase-like

Structural contacts of domain e3ekmB3 of H-group "Diaminopimelate epimerase-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3ekmD3 B:X,Y,Z->D:x,y,z Diaminopimelate epimerase-like Interaction Interface Pymol
e3ekmD4 B:X,Y,Z->D:x,y,z Diaminopimelate epimerase-like Interaction Interface Pymol
e3ekmC5 B:X,Y,Z->C:x,y,z Diaminopimelate epimerase-like Interaction Interface Pymol
e3ekmA5 B:x,y,z->A:X,Y,Z Diaminopimelate epimerase-like Interaction Interface Pymol
e3ekmF3 B:X,Y,Z->F:x,y,z Diaminopimelate epimerase-like Interaction Interface Pymol
e3ekmD4 B:x,y,z->D:-X-1,Y-1/2,-Z Diaminopimelate epimerase-like Interaction Interface Pymol