ECOD: domain e3epc12

Domain ID e3epc12

A: beta sandwiches
X: jelly-roll
H: Nucleoplasmin-like/VP (viral coat and capsid proteins)
T: Nucleoplasmin-like/VP (viral coat and capsid proteins)
F: Rhv

UID:	001043498
Type:	Automatic domain
Parent:	e2mev31
Range:	1:20-302
Ligands:	SPH
PDB:	3epc
PDB Description:	Protein VP1
UniProt:	P03300
Species:

Domains in the same chain:

Download Pymol

e3epc.3	3:1-235,1:20-21	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3epc12	1:20-302	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)

Domains in the same PDB:

e3epc12	1:20-302	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3epc21	2:5-272	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3epc.3	3:1-235,1:20-21	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3epc41	4:2-17,4:21-69	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e3epcR1	R:30-143	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3epcR2	R:143-242	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e3epc12 of H-group "Nucleoplasmin-like/VP (viral coat and capsid proteins)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3epc21	1:x,y,z->2:X,Y,Z	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Interaction Interface Pymol
e3epc.3	1:x,y,z->3:X,Y,Z	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Interaction Interface Pymol
e3epc.3	1:x,y,z->4:X,Y,Z	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Interaction Interface Pymol
e3epcR1	1:X,Y,Z->R:x,y,z	Immunoglobulin-related	Interaction Interface Pymol