ECOD: domain e3epkB1

Domain ID e3epkB1

A: a/b three-layered sandwiches
X: P-loop domains-like
H: P-loop domains-related
T: P-loop containing nucleoside triphosphate hydrolases
F: IPPT

UID:	001526840
Type:	Automatic domain
Parent:	e3exaA1
Range:	B:13-123,B:189-421
Ligands:	MG PPV ZN
PDB:	3epk
PDB Description:	tRNA isopentenyltransferase
UniProt:	P07884
Hsap BLAST neighbor:	Q9H3H1
Species:	Saccharomyces cerevisiae

Domain
In chain context
In PDB context

Structure of domain e3epkB1

Domains in the same chain:

Download Pymol

e3epkB1	B:13-123,B:189-421	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3epkB2	B:124-188	tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain	tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain	tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain

Domains in the same PDB:

e3epkA1	A:13-123,A:189-421	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3epkA2	A:124-188	tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain	tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain	tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain
e3epkB1	B:13-123,B:189-421	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e3epkB2	B:124-188	tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain	tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain	tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain

Structural contacts of domain e3epkB1 of H-group "P-loop domains-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3epkA1	B:x,y,z->A:X,Y,Z	P-loop domains-related	Interaction Interface Pymol