Domain ID e3exaD1

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  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: IPPT
UID: 001509174
Type: Automatic domain
Parent: e3exaA1
Range: D:2-115,D:182-317
PDB: 3exa
PDB Description: tRNA delta(2)-isopentenylpyrophosphate transferase
UniProt: Q9KAC3
Hsap BLAST neighbor: Q9H3H1
Species: Bacillus halodurans

Structure of domain e3exaD1

Domains in the same chain:

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e3exaD1 D:2-115,D:182-317 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3exaD2 D:116-173 tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain

Domains in the same PDB:

e3exaA1 A:2-115,A:188-318 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3exaA2 A:116-173 tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain
e3exaB1 B:2-115,B:182-317 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3exaB2 B:116-173 tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain
e3exaC1 C:2-115,C:188-318 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3exaC2 C:116-173 tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain
e3exaD1 D:2-115,D:182-317 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3exaD2 D:116-173 tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain

Structural contacts of domain e3exaD1 of H-group "P-loop domains-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3exaC2 D:x,y,z->C:X,Y,Z tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain Interaction Interface Pymol
e3exaC1 D:x,y,z->C:X,Y,Z-1 P-loop domains-related Interaction Interface Pymol
e3exaD1 D:x,y,z->D:X-1,Y,Z P-loop domains-related Interaction Interface Pymol
e3exaD1 D:X-1,Y,Z->D:x,y,z P-loop domains-related Interaction Interface Pymol
e3exaA2 D:x,y,z->A:X-1,Y,Z-1 tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain Interaction Interface Pymol
e3exaC1 D:x,y,z->C:X-1,Y,Z-1 P-loop domains-related Interaction Interface Pymol
e3exaB1 D:x,y,z->B:X-2,Y-1,Z-1 P-loop domains-related Interaction Interface Pymol
e3exaB1 D:x,y,z->B:X-2,Y,Z-1 P-loop domains-related Interaction Interface Pymol