| UID: | 000376666 |
|---|---|
| Type: | Automatic domain |
| Parent: | e2hhvA2 |
| Range: | D:469-642 |
| Ligands: | DAD SUC |
| PDB: | 3ez5 |
| PDB Description: | DNA polymerase I |
| UniProt: | P52026 |
| Hsap BLAST neighbor: | Q7Z5Q5 |
| Species: |
Structure of domain e3ez5D2
Domains in the same chain:
Domains in the same PDB:
Structural contacts of domain e3ez5D2 of H-group ""fingers" domain in bacteriophage RB69-like DNA polymerase I":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e3ez5A2 | D:x,y,z->A:-X+5/2,-Y,Z-1/2 | "fingers" domain in bacteriophage RB69-like DNA polymerase I | Interaction Interface Pymol |
| e3ez5A1 | D:x,y,z->A:-X+5/2,-Y,Z-1/2 | helical bundle in Bacillus stearothermophilus-like DNA polymerase I | Interaction Interface Pymol |
| e3ez5A1 | D:x,y,z->A:X,Y,Z | helical bundle in Bacillus stearothermophilus-like DNA polymerase I | Interaction Interface Pymol |
| e3ez5A4 | D:x,y,z->A:X,Y,Z | Ribonuclease H-like | Interaction Interface Pymol |
| e3ez5A4 | D:x,y,z->A:-X+5/2,-Y-1,Z-1/2 | Ribonuclease H-like | Interaction Interface Pymol |
| e3ez5A4 | D:X-1/2,-Y-1/2,-Z->A:x,y,z | Ribonuclease H-like | Interaction Interface Pymol |
| e3ez5A1 | D:x,y,z->A:X-1/2,-Y-1/2,-Z | helical bundle in Bacillus stearothermophilus-like DNA polymerase I | Interaction Interface Pymol |
| e3ez5A3 | D:x,y,z->A:X-1/2,-Y-1/2,-Z | Adenylyl and guanylyl cyclase catalytic domain-like | Interaction Interface Pymol |
| e3ez5D4 | D:-X+3,Y-1/2,-Z-1/2->D:x,y,z | Ribonuclease H-like | Interaction Interface Pymol |
