Domain ID e3ezjD1

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  • A: beta sandwiches
  • X: Immunoglobulin-like beta-sandwich
  • H: Immunoglobulin-related
  • T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like
  • F: V-set
UID: 000357678
Type: Automatic domain
Parent: e2p49B1
Range: D:1-120
Ligands: CL PO4
PDB: 3ezj
PDB Description: NANOBODY NBGSPD_7
Hsap BLAST neighbor: P01767
Species: Lama glama

Structure of domain e3ezjD1

Domains in the same chain:

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e3ezjD1 D:1-120 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Domains in the same PDB:

e3ezjA2 A:3-80 N0 domain in phage tail proteins and secretins-like N0 domain in phage tail proteins and secretins N0 domain in phage tail proteins and secretins
e3ezjA4 A:100-168 Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system
e3ezjA3 A:168-235 Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system
e3ezjB1 B:1-120 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ezjC1 C:3-78 N0 domain in phage tail proteins and secretins-like N0 domain in phage tail proteins and secretins N0 domain in phage tail proteins and secretins
e3ezjC3 C:99-168 Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system
e3ezjC2 C:168-235 Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system
e3ezjD1 D:1-120 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ezjE2 E:4-78 N0 domain in phage tail proteins and secretins-like N0 domain in phage tail proteins and secretins N0 domain in phage tail proteins and secretins
e3ezjE5 E:99-167 Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system
e3ezjE4 E:168-235 Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system
e3ezjF1 F:1-120 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3ezjG3 G:3-80 N0 domain in phage tail proteins and secretins-like N0 domain in phage tail proteins and secretins N0 domain in phage tail proteins and secretins
e3ezjG1 G:99-167 Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system
e3ezjG4 G:168-235 Alpha-lytic protease prodomain-like Ring-building motif II in type III secretion system Ring-building motif II in type III secretion system
e3ezjH1 H:1-120 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e3ezjD1 of H-group "Immunoglobulin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3ezjC1 D:x,y,z->C:X,Y,Z N0 domain in phage tail proteins and secretins Interaction Interface Pymol
e3ezjC3 D:x,y,z->C:X,Y,Z Ring-building motif II in type III secretion system Interaction Interface Pymol
e3ezjG1 D:-X+1,-X+Y,-Z+1/3->G:x,y,z Ring-building motif II in type III secretion system Interaction Interface Pymol
e3ezjH1 D:X,Y,Z->H:x,y,z Immunoglobulin-related Interaction Interface Pymol
e3ezjG4 D:x,y,z->G:X,Y,Z Ring-building motif II in type III secretion system Interaction Interface Pymol
e3ezjH1 D:-X+1,-X+Y,-Z+1/3->H:x,y,z Immunoglobulin-related Interaction Interface Pymol