ECOD: domain e3f1vB2

Domain ID e3f1vB2

A: a+b two layers
X: DNA clamp
H: DNA clamp
T: DNA clamp
F: DNA_pol3_beta_2

UID:	000371141
Type:	Automatic domain
Parent:	e1ok7A2
Range:	B:123-244
PDB:	3f1v
PDB Description:	DNA polymerase III subunit beta
UniProt:	P0A988
Species:	Escherichia coli

Domains in the same chain:

Download Pymol

e3f1vB1	B:1-122	DNA clamp	DNA clamp	DNA clamp
e3f1vB2	B:123-244	DNA clamp	DNA clamp	DNA clamp
e3f1vB3	B:245-366	DNA clamp	DNA clamp	DNA clamp

Domains in the same PDB:

e3f1vA1	A:1-122	DNA clamp	DNA clamp	DNA clamp
e3f1vA2	A:123-244	DNA clamp	DNA clamp	DNA clamp
e3f1vA3	A:245-366	DNA clamp	DNA clamp	DNA clamp
e3f1vB1	B:1-122	DNA clamp	DNA clamp	DNA clamp
e3f1vB2	B:123-244	DNA clamp	DNA clamp	DNA clamp
e3f1vB3	B:245-366	DNA clamp	DNA clamp	DNA clamp

Structural contacts of domain e3f1vB2 of H-group "DNA clamp":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3f1vA3	B:X,Y,Z-1->A:x,y,z	DNA clamp	Interaction Interface Pymol
e3f1vA1	B:X,Y-1,Z->A:x,y,z	DNA clamp	Interaction Interface Pymol
e3f1vA3	B:X-1,Y,Z->A:x,y,z	DNA clamp	Interaction Interface Pymol
e3f1vA1	B:X-1,Y,Z->A:x,y,z	DNA clamp	Interaction Interface Pymol
e3f1vA1	B:X-1,Y-1,Z->A:x,y,z	DNA clamp	Interaction Interface Pymol
e3f1vB3	B:x,y,z->B:X-1,Y,Z	DNA clamp	Interaction Interface Pymol
e3f1vB2	B:x,y,z->B:X-1,Y,Z	DNA clamp	Interaction Interface Pymol
e3f1vB2	B:X-1,Y,Z->B:x,y,z	DNA clamp	Interaction Interface Pymol
e3f1vA3	B:X-1,Y,Z-1->A:x,y,z	DNA clamp	Interaction Interface Pymol