ECOD: domain e3f2dA1

Domain ID e3f2dA1

A: a/b barrels
X: TIM beta/alpha-barrel
H: TIM barrels
T: TIM barrels
F: PHP

UID:	001758975
Type:	Automatic domain
Parent:	e3f2bA2
Range:	A:331-816
Ligands:	MN PO4 ZN
PDB:	3f2d
PDB Description:	GEOBACILLUS KAUSTOPHILUS DNA POLC
UniProt:	Q5L0J3
Species:	Geobacillus kaustophilus

Domains in the same chain:

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e3f2dA6	A:233-330	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e3f2dA1	A:331-816	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e3f2dA3	A:817-914,A:956-1102	Nucleotidyltransferase-like	Nucleotidyltransferase	Nucleotidyltransferase
e3f2dA5	A:915-955	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e3f2dA4	A:1103-1293	DNA polymerase III finger domain	DNA polymerase III finger domain	DNA polymerase III finger domain
e3f2dA2	A:1294-1444	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like

Domains in the same PDB:

e3f2dA6	A:233-330	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e3f2dA1	A:331-816	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e3f2dA3	A:817-914,A:956-1102	Nucleotidyltransferase-like	Nucleotidyltransferase	Nucleotidyltransferase
e3f2dA5	A:915-955	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e3f2dA4	A:1103-1293	DNA polymerase III finger domain	DNA polymerase III finger domain	DNA polymerase III finger domain
e3f2dA2	A:1294-1444	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like

Structural contacts of domain e3f2dA1 of H-group "TIM barrels":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3f2dA4	A:x,y,z->A:-X+1,Y,-Z-1/2	DNA polymerase III finger domain	Interaction Interface Pymol
e3f2dA4	A:-X+1,Y,-Z-1/2->A:x,y,z	DNA polymerase III finger domain	Interaction Interface Pymol
e3f2dA3	A:x,y,z->A:-X+1/2,Y-1/2,-Z-1/2	Nucleotidyltransferase	Interaction Interface Pymol