ECOD: domain e3f9ks2

Domain ID e3f9ks2

A: mixed a+b and a/b
X: Ribonuclease H-like
H: Ribonuclease H-like
T: Ribonuclease H-like
F: rve

UID:	000356271
Type:	Automatic domain
Parent:	e1cxqA1
Range:	s:47-207
Ligands:	MG
PDB:	3f9k
PDB Description:	INTEGRASE
UniProt:	P04584
Hsap BLAST neighbor:	Q9WJR5
Species:

Domains in the same chain:

Download Pymol

e3f9ks1	s:4-46	HTH	HTH	tri-helical
e3f9ks2	s:47-207	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like

Domains in the same PDB:

e3f9ka1	a:347-440	N-cbl like	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
e3f9kA1	A:4-46	HTH	HTH	tri-helical
e3f9kA2	A:47-207	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3f9kB1	B:1-43	HTH	HTH	tri-helical
e3f9kB2	B:54-206	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3f9kc1	c:4-46	HTH	HTH	tri-helical
e3f9kc2	c:47-207	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3f9kC1	C:347-440	N-cbl like	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
e3f9kd1	d:1-43	HTH	HTH	tri-helical
e3f9kd2	d:54-206	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3f9ke1	e:347-440	N-cbl like	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
e3f9kE1	E:4-46	HTH	HTH	tri-helical
e3f9kE2	E:47-207	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3f9kF1	F:1-43	HTH	HTH	tri-helical
e3f9kF2	F:54-206	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3f9kg1	g:4-46	HTH	HTH	tri-helical
e3f9kg2	g:47-207	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3f9kG1	G:347-440	N-cbl like	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
e3f9kh1	h:1-43	HTH	HTH	tri-helical
e3f9kh2	h:54-206	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3f9ki1	i:347-440	N-cbl like	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
e3f9kI1	I:4-46	HTH	HTH	tri-helical
e3f9kI2	I:47-207	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3f9kJ1	J:1-43	HTH	HTH	tri-helical
e3f9kJ2	J:54-206	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3f9kk1	k:4-46	HTH	HTH	tri-helical
e3f9kk2	k:47-207	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3f9kK1	K:347-440	N-cbl like	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
e3f9kl1	l:1-43	HTH	HTH	tri-helical
e3f9kl2	l:54-206	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3f9km1	m:347-440	N-cbl like	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
e3f9kM1	M:4-46	HTH	HTH	tri-helical
e3f9kM2	M:47-207	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3f9kN1	N:1-43	HTH	HTH	tri-helical
e3f9kN2	N:54-206	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3f9ko1	o:4-46	HTH	HTH	tri-helical
e3f9ko2	o:47-207	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3f9kO1	O:347-440	N-cbl like	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
e3f9kp1	p:1-43	HTH	HTH	tri-helical
e3f9kp2	p:54-206	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3f9kq1	q:347-440	N-cbl like	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
e3f9kQ1	Q:4-46	HTH	HTH	tri-helical
e3f9kQ2	Q:47-207	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3f9kR1	R:1-43	HTH	HTH	tri-helical
e3f9kR2	R:54-206	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3f9ks1	s:4-46	HTH	HTH	tri-helical
e3f9ks2	s:47-207	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3f9kS1	S:347-440	N-cbl like	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
e3f9kt1	t:1-43	HTH	HTH	tri-helical
e3f9kt2	t:54-206	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3f9ku1	u:347-440	N-cbl like	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
e3f9kU1	U:4-46	HTH	HTH	tri-helical
e3f9kU2	U:47-207	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3f9kV1	V:1-43	HTH	HTH	tri-helical
e3f9kV2	V:54-206	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3f9kW1	W:347-440	N-cbl like	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
e3f9kY1	Y:4-46	HTH	HTH	tri-helical
e3f9kY2	Y:47-207	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3f9kZ1	Z:1-43	HTH	HTH	tri-helical
e3f9kZ2	Z:54-206	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like

Structural contacts of domain e3f9ks2 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3f9kt1	s:X,Y,Z->t:x,y,z	HTH	Interaction Interface Pymol
e3f9kt2	s:X,Y,Z->t:x,y,z	Ribonuclease H-like	Interaction Interface Pymol
e3f9ko2	s:x,y,z->o:X,Y,Z	Ribonuclease H-like	Interaction Interface Pymol
e3f9kk2	s:x,y,z->k:X,Y,Z	Ribonuclease H-like	Interaction Interface Pymol
e3f9kk1	s:x,y,z->k:X,Y,Z	HTH	Interaction Interface Pymol
e3f9ku1	s:X,Y,Z->u:x,y,z	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	Interaction Interface Pymol