Domain ID e3f9ks2

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: rve
UID: 000356271
Type: Automatic domain
Parent: e1cxqA1
Range: s:47-207
Ligands: MG
PDB: 3f9k
PDB Description: INTEGRASE
UniProt: P04584
Hsap BLAST neighbor: Q9WJR5
Species:

Structure of domain e3f9ks2

Domains in the same chain:

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e3f9ks1 s:4-46 HTH HTH tri-helical
e3f9ks2 s:47-207 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Domains in the same PDB:

e3f9ka1 a:347-440 N-cbl like Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
e3f9kA1 A:4-46 HTH HTH tri-helical
e3f9kA2 A:47-207 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3f9kB1 B:1-43 HTH HTH tri-helical
e3f9kB2 B:54-206 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3f9kc1 c:4-46 HTH HTH tri-helical
e3f9kc2 c:47-207 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3f9kC1 C:347-440 N-cbl like Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
e3f9kd1 d:1-43 HTH HTH tri-helical
e3f9kd2 d:54-206 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3f9ke1 e:347-440 N-cbl like Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
e3f9kE1 E:4-46 HTH HTH tri-helical
e3f9kE2 E:47-207 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3f9kF1 F:1-43 HTH HTH tri-helical
e3f9kF2 F:54-206 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3f9kg1 g:4-46 HTH HTH tri-helical
e3f9kg2 g:47-207 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3f9kG1 G:347-440 N-cbl like Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
e3f9kh1 h:1-43 HTH HTH tri-helical
e3f9kh2 h:54-206 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3f9ki1 i:347-440 N-cbl like Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
e3f9kI1 I:4-46 HTH HTH tri-helical
e3f9kI2 I:47-207 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3f9kJ1 J:1-43 HTH HTH tri-helical
e3f9kJ2 J:54-206 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3f9kk1 k:4-46 HTH HTH tri-helical
e3f9kk2 k:47-207 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3f9kK1 K:347-440 N-cbl like Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
e3f9kl1 l:1-43 HTH HTH tri-helical
e3f9kl2 l:54-206 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3f9km1 m:347-440 N-cbl like Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
e3f9kM1 M:4-46 HTH HTH tri-helical
e3f9kM2 M:47-207 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3f9kN1 N:1-43 HTH HTH tri-helical
e3f9kN2 N:54-206 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3f9ko1 o:4-46 HTH HTH tri-helical
e3f9ko2 o:47-207 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3f9kO1 O:347-440 N-cbl like Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
e3f9kp1 p:1-43 HTH HTH tri-helical
e3f9kp2 p:54-206 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3f9kq1 q:347-440 N-cbl like Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
e3f9kQ1 Q:4-46 HTH HTH tri-helical
e3f9kQ2 Q:47-207 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3f9kR1 R:1-43 HTH HTH tri-helical
e3f9kR2 R:54-206 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3f9ks1 s:4-46 HTH HTH tri-helical
e3f9ks2 s:47-207 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3f9kS1 S:347-440 N-cbl like Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
e3f9kt1 t:1-43 HTH HTH tri-helical
e3f9kt2 t:54-206 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3f9ku1 u:347-440 N-cbl like Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
e3f9kU1 U:4-46 HTH HTH tri-helical
e3f9kU2 U:47-207 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3f9kV1 V:1-43 HTH HTH tri-helical
e3f9kV2 V:54-206 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3f9kW1 W:347-440 N-cbl like Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
e3f9kY1 Y:4-46 HTH HTH tri-helical
e3f9kY2 Y:47-207 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3f9kZ1 Z:1-43 HTH HTH tri-helical
e3f9kZ2 Z:54-206 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Structural contacts of domain e3f9ks2 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3f9kt1 s:X,Y,Z->t:x,y,z HTH Interaction Interface Pymol
e3f9kt2 s:X,Y,Z->t:x,y,z Ribonuclease H-like Interaction Interface Pymol
e3f9ko2 s:x,y,z->o:X,Y,Z Ribonuclease H-like Interaction Interface Pymol
e3f9kk2 s:x,y,z->k:X,Y,Z Ribonuclease H-like Interaction Interface Pymol
e3f9kk1 s:x,y,z->k:X,Y,Z HTH Interaction Interface Pymol
e3f9ku1 s:X,Y,Z->u:x,y,z Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Interaction Interface Pymol