Domain ID e3ffiB3

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: RNaseH-like domain in reverse transcriptase
  • T: RNaseH-like domain in reverse transcriptase
  • F: RVT_connect
UID: 000379160
Type: Automatic domain
Parent: e2zd1B3
Range: B:312-428
PDB: 3ffi
PDB Description: RT p51
UniProt: P04585
Species:

Structure of domain e3ffiB3

Domains in the same chain:

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e3ffiB2 B:5-237 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3ffiB1 B:238-311 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3ffiB3 B:312-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Domains in the same PDB:

e3ffiA8 A:1-239 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3ffiA7 A:240-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3ffiA5 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e3ffiA6 A:429-553 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3ffiB2 B:5-237 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3ffiB1 B:238-311 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3ffiB3 B:312-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Structural contacts of domain e3ffiB3 of H-group "RNaseH-like domain in reverse transcriptase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3ffiA6 B:x,y,z->A:X,Y,Z Ribonuclease H-like Interaction Interface Pymol
e3ffiA5 B:x,y,z->A:X,Y,Z RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e3ffiA8 B:x,y,z->A:-X+1/2,Y-1/2,-Z+1/2 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3ffiA6 B:x,y,z->A:-X+1,Y,-Z+1/2 Ribonuclease H-like Interaction Interface Pymol
e3ffiB3 B:x,y,z->B:X,-Y,-Z RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e3ffiB3 B:X,-Y,-Z->B:x,y,z RNaseH-like domain in reverse transcriptase Interaction Interface Pymol