Domain ID e3fikC1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Ribosomal_L2
UID: 001307888
Type: Automatic domain
Parent: e1vqoA1
Range: C:1-124
PDB: 3fik
PDB Description:
Hsap BLAST neighbor: Q5T653
Species:

Structure of domain e3fikC1

Domains in the same chain:

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e3fikC1 C:1-124 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3fikC2 C:125-271 SH3 SH3 SH3

Domains in the same PDB:

e3fik01 0:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3fik21 2:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e3fik31 3:1-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e3fik41 4:1-38 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e3fik54 5:1-68,5:160-234 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e3fik53 5:69-159 Flavodoxin-like Rossmann-like domain in Ribosomal protein L1 Rossmann-like domain in Ribosomal protein L1
e3fikC1 C:1-124 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3fikC2 C:125-271 SH3 SH3 SH3
e3fikE1 E:1-201 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3fikF1 F:1-178 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3fikG2 G:1-81 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3fikG1 G:82-176 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3fikH4 H:1-54 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e3fikI2 I:1-71 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e3fikI1 I:72-141 HTH HTH Ribosomal protein L11, C-terminal domain
e3fikJ1 J:1-142 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3fikK1 K:1-121 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3fikN1 N:1-120 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e3fikO1 O:2-117 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3fikR1 R:1-103 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e3fikS1 S:1-110 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3fikT1 T:1-93 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3fikU1 U:1-102 SH3 SH3 SH3
e3fikV1 V:1-94 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3fikW1 W:6-84 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3fikX1 X:1-77 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e3fikY1 Y:1-63 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3fikZ1 Z:1-58 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e

Structural contacts of domain e3fikC1 of H-group "Nucleic acid-binding proteins":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1vqoA1 C:x,y,z->H:X,Y,Z Nucleic acid-binding proteins Interaction Interface Pymol