Domain ID e3gcmB1

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  • A: alpha arrays
  • X: HTH
  • H: Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
  • T: Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
  • F: PNPase
UID: 000364915
Type: Automatic domain
Parent: e1e3hA1
Range: B:237-321
PDB: 3gcm
PDB Description: POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
UniProt: A7ZS61
Species:

Structure of domain e3gcmB1

Domains in the same chain:

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e3gcmB4 B:1-144 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3gcmB2 B:145-236 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3gcmB1 B:237-321 HTH Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
e3gcmB5 B:322-458 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3gcmB3 B:459-544 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2

Domains in the same PDB:

e3gcmA4 A:2-144 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3gcmA5 A:145-236 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3gcmA3 A:237-321 HTH Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
e3gcmA1 A:322-458 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3gcmA2 A:459-545 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3gcmB4 B:1-144 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3gcmB2 B:145-236 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3gcmB1 B:237-321 HTH Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
e3gcmB5 B:322-458 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3gcmB3 B:459-544 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3gcmC4 C:1-144 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3gcmC2 C:145-236 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e3gcmC1 C:237-321 HTH Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
e3gcmC5 C:322-458 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e3gcmC3 C:459-544 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2

Structural contacts of domain e3gcmB1 of H-group "Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3gcmC4 B:X,Y,Z->C:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e3gcmC1 B:-Y-1/2,X+1/2,Z-1/4->C:x,y,z Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Interaction Interface Pymol
e3gcmA5 B:-Y-1/2,X+1/2,Z-1/4->A:x,y,z Ribonuclease PH domain 2 Interaction Interface Pymol