| UID: | 000383326 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1km4A1 |
| Range: | B:3-262 |
| PDB: | 3gdm |
| PDB Description: | Orotidine 5'-phosphate decarboxylase |
| UniProt: | P03962 |
| Hsap BLAST neighbor: | P11172 |
| Species: | Saccharomyces cerevisiae |
Structure of domain e3gdmB1
Domains in the same chain:
| e3gdmB1 | B:3-262 | TIM beta/alpha-barrel | TIM barrels | TIM barrels |
Domains in the same PDB:
| e3gdmA1 | A:3-263 | TIM beta/alpha-barrel | TIM barrels | TIM barrels |
| e3gdmB1 | B:3-262 | TIM beta/alpha-barrel | TIM barrels | TIM barrels |
Structural contacts of domain e3gdmB1 of H-group "TIM barrels":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e3gdmA1 | B:x,y,z->A:X,Y,Z | TIM barrels | Interaction Interface Pymol |
| e3gdmA1 | B:-X+1,Y-1/2,-Z+1->A:x,y,z | TIM barrels | Interaction Interface Pymol |
| e3gdmA1 | B:-X,Y-1/2,-Z->A:x,y,z | TIM barrels | Interaction Interface Pymol |
| e3gdmB1 | B:x,y,z->B:-X+1,Y-1/2,-Z+1 | TIM barrels | Interaction Interface Pymol |
| e3gdmB1 | B:-X+1,Y-1/2,-Z+1->B:x,y,z | TIM barrels | Interaction Interface Pymol |
| e3gdmA1 | B:X-1,Y,Z->A:x,y,z | TIM barrels | Interaction Interface Pymol |
