ECOD: domain e3gkuA1

Domain ID e3gkuA1

A: a+b two layers
X: Dodecin subunit-like
H: Probable RNA-binding protein N-terminal domain
T: Probable RNA-binding protein N-terminal domain
F: Jag_N

UID:	001003937
Type:	Manual and representative domain
Range:	A:1-56
PDB:	3gku
PDB Description:	PROBABLE RNA-BINDING PROTEIN
UniProt:	D0VX24
Species:

Domain
In chain context
In PDB context

Structure of domain e3gkuA1

Domains in the same chain:

Download Pymol

e3gkuA1	A:1-56	Dodecin subunit-like	Probable RNA-binding protein N-terminal domain	Probable RNA-binding protein N-terminal domain
e3gkuA2	A:57-137	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e3gkuA3	A:138-208	R3H domain-like	R3H domain	R3H domain

Domains in the same PDB:

e3gkuA1	A:1-56	Dodecin subunit-like	Probable RNA-binding protein N-terminal domain	Probable RNA-binding protein N-terminal domain
e3gkuA2	A:57-137	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e3gkuA3	A:138-208	R3H domain-like	R3H domain	R3H domain
e3gkuB9	B:2-54	Dodecin subunit-like	Probable RNA-binding protein N-terminal domain	Probable RNA-binding protein N-terminal domain
e3gkuB7	B:55-135	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e3gkuB8	B:136-206	R3H domain-like	R3H domain	R3H domain
e3gkuC1	C:1-56	Dodecin subunit-like	Probable RNA-binding protein N-terminal domain	Probable RNA-binding protein N-terminal domain
e3gkuC2	C:57-145	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)

Structural contacts of domain e3gkuA1 of H-group "Probable RNA-binding protein N-terminal domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3gkuA3	A:x,y,z->A:-Y+1,X-Y,Z+1/3	R3H domain	Interaction Interface Pymol
e3gkuA1	A:x,y,z->A:X-Y,-Y,-Z+2/3	Probable RNA-binding protein N-terminal domain	Interaction Interface Pymol
e3gkuA1	A:X-Y,-Y,-Z+2/3->A:x,y,z	Probable RNA-binding protein N-terminal domain	Interaction Interface Pymol
e3gkuB7	A:x,y,z->B:-Y+1,X-Y,Z+1/3	KH-domains	Interaction Interface Pymol