Domain ID e3gp9A1

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Nucleoside diphosphate kinases
  • T: Nucleoside diphosphate kinases
  • F: NDK
UID: 000369452
Type: Automatic domain
Parent: e3bbbA1
Range: A:-1-131
Ligands: GDP MG PO4
PDB: 3gp9
PDB Description: NUCLEOSIDE DIPHOSPHATE KINASE
UniProt: Q5UQL3
Hsap BLAST neighbor: Q13232
Species: Acanthamoeba polyphaga mimivirus

Structure of domain e3gp9A1

Structural contacts of domain e3gp9A1 of H-group "Nucleoside diphosphate kinases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3gp9C1 A:X,-Y,-Z->C:x,y,z Nucleoside diphosphate kinases Interaction Interface Pymol
e3gp9E1 A:X,Y,Z->E:x,y,z Nucleoside diphosphate kinases Interaction Interface Pymol
e3gp9C1 A:X,Y,Z->C:x,y,z Nucleoside diphosphate kinases Interaction Interface Pymol
e3gp9B1 A:x,y,z->B:-X+1/2,Y-1/2,-Z+1/2 Nucleoside diphosphate kinases Interaction Interface Pymol
e3gp9D1 A:-X+1,Y,-Z+1/2->D:x,y,z Nucleoside diphosphate kinases Interaction Interface Pymol