Domain ID e3gv5D2

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  • A: a+b two layers
  • X: Reverse ferredoxin
  • H: Lesion bypass DNA polymerase (Y-family), little finger domain
  • T: Lesion bypass DNA polymerase (Y-family), little finger domain
  • F: IMS_C
UID: 000364543
Type: Automatic domain
Parent: e1jx4A2
Range: D:300-415
Ligands: CA
PDB: 3gv5
PDB Description: DNA polymerase iota
UniProt: Q9UNA4
Hsap BLAST neighbor: Q9UNA4
Species: Homo sapiens

Structure of domain e3gv5D2

Domains in the same chain:

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e3gv5D3 D:26-50,D:101-234 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3gv5D4 D:48-100 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e3gv5D1 D:234-299 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3gv5D2 D:300-415 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Domains in the same PDB:

e3gv5B3 B:28-47,B:98-233 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3gv5B4 B:48-97 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e3gv5B1 B:234-299 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3gv5B2 B:300-414 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain
e3gv5D3 D:26-50,D:101-234 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3gv5D4 D:48-100 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e3gv5D1 D:234-299 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3gv5D2 D:300-415 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Structural contacts of domain e3gv5D2 of H-group "Lesion bypass DNA polymerase (Y-family), little finger domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3gv5B3 D:X-1/2,Y+1/2,Z->B:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3gv5D2 D:x,y,z->D:-X+3/2,Y-1/2,-Z Lesion bypass DNA polymerase (Y-family), little finger domain Interaction Interface Pymol
e3gv5D1 D:-X+3/2,Y-1/2,-Z->D:x,y,z SAM/DNA-glycosylase Interaction Interface Pymol
e3gv5D2 D:-X+3/2,Y-1/2,-Z->D:x,y,z Lesion bypass DNA polymerase (Y-family), little finger domain Interaction Interface Pymol