ECOD: domain e3gvjA3

Domain ID e3gvjA3

A: beta barrels
X: cradle loop barrel
H: RIFT-related
T: Alanine racemase-C
F: End_beta_barrel

UID:	001338943
Type:	Automatic domain
Parent:	e1v0eA3
Range:	A:423-511
PDB:	3gvj
PDB Description:	Endo-N-acetylneuraminidase
UniProt:	Q04830
Species:	Enterobacteria phage K1F

Domain
In chain context
In PDB context

Structure of domain e3gvjA3

Domains in the same chain:

Download Pymol

e3gvjA1	A:241-311	Single-stranded right-handed beta-helix	Pectin lyase-like	Pectin lyase-like
e3gvjA4	A:312-422,A:512-760	beta-propeller-like	beta-propeller	6-bladed
e3gvjA3	A:423-511	cradle loop barrel	RIFT-related	Alanine racemase-C
e3gvjA2	A:761-910	Phage tail fiber protein trimerization domain	Phage tail fiber protein trimerization domain	Phage tail fiber protein trimerization domain

Domains in the same PDB:

e3gvjA1	A:241-311	Single-stranded right-handed beta-helix	Pectin lyase-like	Pectin lyase-like
e3gvjA4	A:312-422,A:512-760	beta-propeller-like	beta-propeller	6-bladed
e3gvjA3	A:423-511	cradle loop barrel	RIFT-related	Alanine racemase-C
e3gvjA2	A:761-910	Phage tail fiber protein trimerization domain	Phage tail fiber protein trimerization domain	Phage tail fiber protein trimerization domain

Structural contacts of domain e3gvjA3 of H-group "RIFT-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3gvjA4	A:x,y,z->A:-Y+1,X-Y,Z	beta-propeller	Interaction Interface Pymol
e3gvjA1	A:-Y+2/3,X-Y+1/3,Z+1/3->A:x,y,z	Pectin lyase-like	Interaction Interface Pymol