ECOD: domain e3gydB1

Domain ID e3gydB1

A: beta sandwiches
X: jelly-roll
H: Double-stranded beta-helix
T: Double-stranded beta-helix
F: cNMP_binding

UID:	000361534
Type:	Automatic domain
Parent:	e1o5lA1
Range:	B:-11-168
Ligands:	CMP GOL
PDB:	3gyd
PDB Description:	Cyclic nucleotide-binding domain
UniProt:	Q1GZZ4
Species:

Domains in the same chain:

Download Pymol

e3gydB1	B:-11-168	jelly-roll	Double-stranded beta-helix	Double-stranded beta-helix

Domains in the same PDB:

e3gydA1	A:-9-168	jelly-roll	Double-stranded beta-helix	Double-stranded beta-helix
e3gydB1	B:-11-168	jelly-roll	Double-stranded beta-helix	Double-stranded beta-helix

Structural contacts of domain e3gydB1 of H-group "Double-stranded beta-helix":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3gydA1	B:x,y,z->A:X,Y,Z	Double-stranded beta-helix	Interaction Interface Pymol
e3gydB1	B:x,y,z->B:-X,Y-1/2,-Z	Double-stranded beta-helix	Interaction Interface Pymol
e3gydB1	B:-X,Y-1/2,-Z->B:x,y,z	Double-stranded beta-helix	Interaction Interface Pymol
e3gydA1	B:-X+1,Y-1/2,-Z+1->A:x,y,z	Double-stranded beta-helix	Interaction Interface Pymol
e3gydA1	B:x,y,z->A:X-1,Y,Z	Double-stranded beta-helix	Interaction Interface Pymol
e3gydA1	B:x,y,z->A:-X+1,Y-1/2,-Z	Double-stranded beta-helix	Interaction Interface Pymol
e3gydA1	B:x,y,z->A:-X+1,Y-1/2,-Z+1	Double-stranded beta-helix	Interaction Interface Pymol
e3gydB1	B:x,y,z->B:-X+1,Y-1/2,-Z	Double-stranded beta-helix	Interaction Interface Pymol
e3gydB1	B:-X+1,Y-1/2,-Z->B:x,y,z	Double-stranded beta-helix	Interaction Interface Pymol
e3gydB1	B:x,y,z->B:X,Y-1,Z	Double-stranded beta-helix	Interaction Interface Pymol
e3gydB1	B:X,Y-1,Z->B:x,y,z	Double-stranded beta-helix	Interaction Interface Pymol