ECOD: domain e3gyyB1

Domain ID e3gyyB1

A: a/b three-layered sandwiches
X: Periplasmic binding protein-like II
H: Periplasmic binding protein-like II
T: Periplasmic binding protein-like II
F: DctP

UID:	001520659
Type:	Automatic domain
Parent:	e3gyyA2
Range:	B:121-210
Ligands:	ZN
PDB:	3gyy
PDB Description:	PERIPLASMIC SUBSTRATE BINDING PROTEIN
UniProt:	E1VBK1
Species:	Halomonas elongata

Domains in the same chain:

Download Pymol

e3gyyB2	B:1-121,B:211-311	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3gyyB1	B:121-210	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II

Domains in the same PDB:

e3gyyA1	A:1-120,A:210-308	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3gyyA2	A:121-209	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3gyyB2	B:1-121,B:211-311	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3gyyB1	B:121-210	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3gyyC2	C:1-121,C:211-311	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3gyyC1	C:121-210	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3gyyD2	D:1-120,D:210-311	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3gyyD1	D:121-209	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II

Structural contacts of domain e3gyyB1 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3gyyA1	B:-X,Y-1/2,-Z->A:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol
e3gyyA2	B:x,y,z->A:-X,Y-1/2,-Z	Periplasmic binding protein-like II	Interaction Interface Pymol
e3gyyA1	B:x,y,z->A:-X,Y-1/2,-Z	Periplasmic binding protein-like II	Interaction Interface Pymol
e3gyyA1	B:X,Y,Z-1->A:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol
e3gyyD2	B:x,y,z->D:-X-1,Y-1/2,-Z	Periplasmic binding protein-like II	Interaction Interface Pymol
e3gyyD1	B:X-1,Y,Z-1->D:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol