ECOD: domain e3hkmB3

Domain ID e3hkmB3

A: a+b two layers
X: Ribosomal protein S5 domain 2-like
H: Ribosomal protein S5 domain 2-like
T: Ribosomal protein S5 domain 2-like
F: RNase_PH

UID:	001178598
Type:	Automatic domain
Parent:	e2nn6A2
Range:	B:5-132
PDB:	3hkm
PDB Description:	OS03G0854200 PROTEIN
UniProt:	Q84T68
Hsap BLAST neighbor:	Q9NQT4
Species:

Domains in the same chain:

Download Pymol

e3hkmB3	B:5-132	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e3hkmB4	B:130-232	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2

Domains in the same PDB:

e3hkmA2	A:5-132	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e3hkmA1	A:133-231	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e3hkmB3	B:5-132	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e3hkmB4	B:130-232	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2
e3hkmC4	C:5-126	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e3hkmC3	C:127-172,C:194-233	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2	Ribonuclease PH domain 2

Structural contacts of domain e3hkmB3 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3hkmB4	B:x,y,z->B:-Y+1,X-Y+1,Z+1/3	Ribonuclease PH domain 2	Interaction Interface Pymol
e3hkmB3	B:x,y,z->B:-Y+1,X-Y+1,Z+1/3	Ribosomal protein S5 domain 2-like	Interaction Interface Pymol
e3hkmB3	B:-Y+1,X-Y+1,Z+1/3->B:x,y,z	Ribosomal protein S5 domain 2-like	Interaction Interface Pymol
e3hkmB4	B:-Y+1,X-Y+1,Z+1/3->B:x,y,z	Ribonuclease PH domain 2	Interaction Interface Pymol
e3hkmA1	B:x,y,z->A:X,Y,Z	Ribonuclease PH domain 2	Interaction Interface Pymol
e3hkmB4	B:x,y,z->B:-Y+1,X-Y+1,Z-2/3	Ribonuclease PH domain 2	Interaction Interface Pymol
e3hkmB4	B:x,y,z->B:X,Y,Z-1	Ribonuclease PH domain 2	Interaction Interface Pymol