ECOD: domain e3hkwA2

Domain ID e3hkwA2

A: a+b two layers
X: Alpha-beta plaits
H: Adenylyl and guanylyl cyclase catalytic domain-like
T: Adenylyl and guanylyl cyclase catalytic domain-like
F: RdRP_3

UID:	000139291
Type:	Automatic domain
Parent:	e1gx5A2
Range:	A:1-357
Ligands:	GOL IX6 SO4
PDB:	3hkw
PDB Description:	NS5B RNA-dependent RNA polymerase
UniProt:	P26664
Species:

Domains in the same chain:

Download Pymol

e3hkwA2	A:1-357	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e3hkwA1	A:358-563	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases

Domains in the same PDB:

e3hkwA2	A:1-357	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e3hkwA1	A:358-563	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases
e3hkwB2	B:1-355	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e3hkwB1	B:356-563	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases
e3hkwC2	C:1-355	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e3hkwC1	C:356-563	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases

Structural contacts of domain e3hkwA2 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3hkwA2	A:x,y,z->A:X,Y,Z-1	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e3hkwA2	A:X,Y,Z-1->A:x,y,z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e3hkwA1	A:X,Y,Z-1->A:x,y,z	helical bundle domain in reverse transcriptase-like polymerases	Interaction Interface Pymol
e3hkwB1	A:x,y,z->B:X,Y,Z-1	helical bundle domain in reverse transcriptase-like polymerases	Interaction Interface Pymol
e3hkwC1	A:x,y,z->C:X,Y,Z-1	helical bundle domain in reverse transcriptase-like polymerases	Interaction Interface Pymol
e3hkwB2	A:X-1,Y,Z->B:x,y,z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e3hkwC2	A:X-1,Y,Z->C:x,y,z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e3hkwB2	A:X,Y,Z->B:x,y,z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e3hkwC2	A:X,Y,Z->C:x,y,z	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol
e3hkwA1	A:X-1,Y,Z->A:x,y,z	helical bundle domain in reverse transcriptase-like polymerases	Interaction Interface Pymol