Domain ID e3hp6D2

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  • A: alpha bundles
  • X: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • H: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • T: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • F: DNA_pol_A
UID: 000393915
Type: Automatic domain
Parent: e2hhvA2
Range: D:469-642
Ligands: D3T SUC
PDB: 3hp6
PDB Description: DNA polymerase I, large fragment
UniProt: Q5KWC1
Hsap BLAST neighbor: Q7Z5Q5
Species: Geobacillus stearothermophilus

Structure of domain e3hp6D2

Domains in the same chain:

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e3hp6D4 D:297-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3hp6D2 D:469-642 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3hp6D3 D:643-667,D:792-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3hp6D1 D:668-791 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e3hp6A4 A:297-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3hp6A2 A:469-642 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3hp6A3 A:643-667,A:792-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3hp6A1 A:668-791 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e3hp6D4 D:297-468 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3hp6D2 D:469-642 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3hp6D3 D:643-667,D:792-876 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3hp6D1 D:668-791 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Structural contacts of domain e3hp6D2 of H-group ""fingers" domain in bacteriophage RB69-like DNA polymerase I":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3hp6A1 D:x,y,z->A:-X+5/2,-Y,Z-1/2 helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e3hp6A2 D:x,y,z->A:-X+5/2,-Y,Z-1/2 "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e3hp6A4 D:x,y,z->A:-X+5/2,-Y-1,Z-1/2 Ribonuclease H-like Interaction Interface Pymol
e3hp6A4 D:x,y,z->A:X,Y,Z Ribonuclease H-like Interaction Interface Pymol
e3hp6A1 D:x,y,z->A:X,Y,Z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e3hp6A4 D:X-1/2,-Y-1/2,-Z->A:x,y,z Ribonuclease H-like Interaction Interface Pymol
e3hp6D4 D:-X+3,Y-1/2,-Z-1/2->D:x,y,z Ribonuclease H-like Interaction Interface Pymol