Domain ID e3hrdE2

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  • A: a+b two layers
  • X: MocoBD/DmpA-related
  • H: MocoBD/DmpA-related
  • T: Molybdenum cofactor-binding domain
  • F: MoCoBD_1
UID: 001873681
Type: Automatic domain
Parent: e3hrdA2
Range: E:128-421
Ligands: CA FES MCN MOS NO3 SE
PDB: 3hrd
PDB Description: NICOTINATE DEHYDROGENASE LARGE MOLYBDOPTERIN SUBUNIT
UniProt: Q0QLF2
Hsap BLAST neighbor: P47989
Species: Eubacterium barkeri

Structure of domain e3hrdE2

Domains in the same chain:

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e3hrdE1 E:1-126 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid CO dehydrogenase molybdoprotein N-domain-like
e3hrdE2 E:128-421 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain

Domains in the same PDB:

e3hrdA1 A:2-127 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid CO dehydrogenase molybdoprotein N-domain-like
e3hrdA2 A:129-421 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e3hrdB1 B:1-330 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e3hrdC1 C:1-177 FAD-binding domain-like FAD-binding domain FAD-binding domain
e3hrdC2 C:178-291 FAD-linked reductases, C-terminal domain-like SufE/NifU SufE/NifU
e3hrdD3 D:1-81 beta-Grasp Ubiquitin-related Ubiquitin-like
e3hrdD4 D:82-160 CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like
e3hrdE1 E:1-126 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid CO dehydrogenase molybdoprotein N-domain-like
e3hrdE2 E:128-421 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e3hrdF1 F:1-330 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e3hrdG2 G:1-177 FAD-binding domain-like FAD-binding domain FAD-binding domain
e3hrdG1 G:178-292 FAD-linked reductases, C-terminal domain-like SufE/NifU SufE/NifU
e3hrdH3 H:1-81 beta-Grasp Ubiquitin-related Ubiquitin-like
e3hrdH4 H:82-157 CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like

Structural contacts of domain e3hrdE2 of H-group "MocoBD/DmpA-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3hrdF1 E:X,Y,Z->F:x,y,z MocoBD/DmpA-related Interaction Interface Pymol
e3hrdH3 E:X,Y,Z->H:x,y,z Ubiquitin-related Interaction Interface Pymol
e3hrdH4 E:X,Y,Z->H:x,y,z CO dehydrogenase ISP C-domain like Interaction Interface Pymol
e3hrdA1 E:x,y,z->A:X,Y,Z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e3hrdB1 E:X,Y,Z->B:x,y,z MocoBD/DmpA-related Interaction Interface Pymol
e3hrdE2 E:x,y,z->E:-X,Y-1/2,-Z-1 MocoBD/DmpA-related Interaction Interface Pymol
e3hrdE2 E:-X,Y-1/2,-Z-1->E:x,y,z MocoBD/DmpA-related Interaction Interface Pymol
e3hrdD4 E:X,Y,Z->D:x,y,z CO dehydrogenase ISP C-domain like Interaction Interface Pymol