Domain ID e3i3dD5

Download files:
  • A: a/b barrels
  • X: TIM beta/alpha-barrel
  • H: TIM barrels
  • T: TIM barrels
  • F: Glyco_hydro_2_C
UID: 000390678
Type: Automatic domain
Parent: e1jz8A5
Range: D:334-625
Ligands: DMS IPT MG NA
PDB: 3i3d
PDB Description: Beta-galactosidase
UniProt: P00722
Hsap BLAST neighbor: P08236
Species:

Structure of domain e3i3dD5

Domains in the same chain:

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e3i3dD1 D:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3i3dD2 D:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3i3dD5 D:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3i3dD3 D:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3i3dD4 D:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Domains in the same PDB:

e3i3dA1 A:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3i3dA2 A:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3i3dA5 A:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3i3dA3 A:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3i3dA4 A:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3i3dB1 B:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3i3dB2 B:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3i3dB5 B:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3i3dB3 B:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3i3dB4 B:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3i3dC1 C:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3i3dC2 C:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3i3dC5 C:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3i3dC3 C:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3i3dC4 C:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich
e3i3dD1 D:13-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e3i3dD2 D:220-333 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3i3dD5 D:334-625 TIM beta/alpha-barrel TIM barrels TIM barrels
e3i3dD3 D:626-730 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3i3dD4 D:731-1023 Glycosyl hydrolase domain-like supersandwich supersandwich

Structural contacts of domain e3i3dD5 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3i3dA5 D:x,y,z->A:X,Y,Z TIM barrels Interaction Interface Pymol
e3i3dA2 D:x,y,z->A:X,Y,Z Immunoglobulin-related Interaction Interface Pymol
e3i3dC5 D:x,y,z->C:X,Y,Z TIM barrels Interaction Interface Pymol