Domain ID e3i5kA1

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  • A: alpha bundles
  • X: helical bundle domain in reverse transcriptase-like polymerases
  • H: helical bundle domain in reverse transcriptase-like polymerases
  • T: helical bundle domain in reverse transcriptase-like polymerases
  • F: RdRP_3
UID: 000136423
Type: Automatic domain
Parent: e1gx5A1
Range: A:358-566
Ligands: PO4
PDB: 3i5k
PDB Description: RNA-directed RNA polymerase
UniProt: Q99IB8
Species:

Structure of domain e3i5kA1

Domains in the same chain:

e3i5kA2 A:1-357 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3i5kA1 A:358-566 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases

Domains in the same PDB:

e3i5kA2 A:1-357 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3i5kA1 A:358-566 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3i5kB2 B:1-357 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3i5kB1 B:358-566 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3i5kC2 C:1-357 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3i5kC1 C:358-566 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e3i5kD2 D:1-357 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3i5kD1 D:358-566 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases

Structural contacts of domain e3i5kA1 of H-group "helical bundle domain in reverse transcriptase-like polymerases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3i5kC1 A:X,Y,Z->C:x,y,z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e3i5kC2 A:X,Y,Z->C:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3i5kA2 A:x,y,z->A:-X,Y-1/2,-Z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3i5kD1 A:X,Y,Z->D:x,y,z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e3i5kD2 A:X,Y,Z->D:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3i5kB1 A:X,Y,Z->B:x,y,z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol