ECOD: domain e3i5oA1

Domain ID e3i5oA1

A: a/b three-layered sandwiches
X: Periplasmic binding protein-like II
H: Periplasmic binding protein-like II
T: Periplasmic binding protein-like II
F: SBP_bac_5

UID:	001545931
Type:	Automatic domain
Parent:	e1vr5A4
Range:	A:259-514
Ligands:	BGC
PDB:	3i5o
PDB Description:	OLIGOPEPTIDE ABC TRANSPORTER, PERIPLASMIC OLIGOPEPTIDE- BINDING PROTEIN
UniProt:	Q9WXN8
Species:	Thermotoga maritima

Domains in the same chain:

Download Pymol

e3i5oA3	A:2-42,A:147-261,A:515-553	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3i5oA2	A:40-146,A:554-583	Alpha-beta plaits	Oligo-peptide binding protein (OPPA) insertion domain	Oligo-peptide binding protein (OPPA) insertion domain
e3i5oA1	A:259-514	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II

Domains in the same PDB:

e3i5oA3	A:2-42,A:147-261,A:515-553	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3i5oA2	A:40-146,A:554-583	Alpha-beta plaits	Oligo-peptide binding protein (OPPA) insertion domain	Oligo-peptide binding protein (OPPA) insertion domain
e3i5oA1	A:259-514	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3i5oB3	B:2-42,B:147-261,B:515-553	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II
e3i5oB2	B:40-146,B:554-583	Alpha-beta plaits	Oligo-peptide binding protein (OPPA) insertion domain	Oligo-peptide binding protein (OPPA) insertion domain
e3i5oB1	B:259-514	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Periplasmic binding protein-like II

Structural contacts of domain e3i5oA1 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3i5oB2	A:X,Y,Z->B:x,y,z	Oligo-peptide binding protein (OPPA) insertion domain	Interaction Interface Pymol
e3i5oB3	A:X,Y,Z->B:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol
e3i5oA3	A:X-1,Y,Z->A:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol
e3i5oB1	A:-X+1,Y-1/2,-Z+1->B:x,y,z	Periplasmic binding protein-like II	Interaction Interface Pymol