Domain ID e3iasC9

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  • A: extended segments
  • X: iron-sulfur center-binding helical hairpin
  • H: iron-sulfur center-binding helical hairpin
  • T: iron-sulfur center-binding helical hairpin
  • F: NADH-G_4Fe-4S_3
UID: 001196150
Type: Automatic domain
Parent: e2fug32
Range: C:96-161
Ligands: SF4
PDB: 3ias
PDB Description: NADH-QUINONE OXIDOREDUCTASE SUBUNIT 3
UniProt: Q56223
Hsap BLAST neighbor: P28331
Species:

Structure of domain e3iasC9

Domains in the same chain:

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e3iasC4 C:1-95 beta-Grasp Ubiquitin-related Ubiquitin-like
e3iasC9 C:96-161 iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin
e3iasC7 C:162-246 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e3iasC10 C:247-304 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1
e3iasC6 C:305-379,C:542-685 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3iasC5 C:375-541 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3iasC8 C:686-777 cradle loop barrel RIFT-related double psi

Domains in the same PDB:

e3ias13 1:2-249 Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like
e3ias12 1:250-333 beta-Grasp Ubiquitin-related Nqo1 middle domain-like
e3ias11 1:334-438 Bromodomain-like Nqo1C-terminal domain-like Nqo1C-terminal domain-like
e3ias22 2:3-74 NQO2 helical bundle domain NQO2 helical bundle domain NQO2 helical bundle domain
e3ias21 2:75-180 Thioredoxin-like Thioredoxin-like Thioredoxin-like
e3ias34 3:1-95 beta-Grasp Ubiquitin-related Ubiquitin-like
e3ias39 3:96-161 iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin
e3ias37 3:162-246 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e3ias310 3:247-304 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1
e3ias36 3:305-379,3:542-685 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3ias35 3:375-541 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3ias38 3:686-777 cradle loop barrel RIFT-related double psi
e3ias45 4:26-64,4:374-409 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3ias44 4:65-107,4:301-373 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3ias46 4:108-300 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e3ias51 5:1-196 Nqo5-like Nqo5-like Nqo5-like
e3ias61 6:15-175 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3ias71 7:3-129 Type III secretory system chaperone-like Frataxin-like Frataxin-like
e3ias91 9:26-179 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e3iasA3 A:2-249 Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like
e3iasA2 A:250-333 beta-Grasp Ubiquitin-related Nqo1 middle domain-like
e3iasA1 A:334-438 Bromodomain-like Nqo1C-terminal domain-like Nqo1C-terminal domain-like
e3iasB2 B:3-74 NQO2 helical bundle domain NQO2 helical bundle domain NQO2 helical bundle domain
e3iasB1 B:75-180 Thioredoxin-like Thioredoxin-like Thioredoxin-like
e3iasC4 C:1-95 beta-Grasp Ubiquitin-related Ubiquitin-like
e3iasC9 C:96-161 iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin
e3iasC7 C:162-246 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e3iasC10 C:247-304 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1
e3iasC6 C:305-379,C:542-685 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3iasC5 C:375-541 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3iasC8 C:686-777 cradle loop barrel RIFT-related double psi
e3iasD5 D:26-64,D:374-409 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3iasD4 D:65-107,D:301-373 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3iasD6 D:108-300 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e3iasE1 E:1-196 Nqo5-like Nqo5-like Nqo5-like
e3iasF1 F:15-175 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3iasG1 G:26-179 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e3iasH1 H:3-129 Type III secretory system chaperone-like Frataxin-like Frataxin-like
e3iasJ3 J:2-249 Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like
e3iasJ2 J:250-333 beta-Grasp Ubiquitin-related Nqo1 middle domain-like
e3iasJ1 J:334-438 Bromodomain-like Nqo1C-terminal domain-like Nqo1C-terminal domain-like
e3iasK2 K:3-74 NQO2 helical bundle domain NQO2 helical bundle domain NQO2 helical bundle domain
e3iasK1 K:75-180 Thioredoxin-like Thioredoxin-like Thioredoxin-like
e3iasL4 L:1-95 beta-Grasp Ubiquitin-related Ubiquitin-like
e3iasL9 L:96-161 iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin
e3iasL7 L:162-246 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e3iasL10 L:247-304 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1
e3iasL6 L:305-379,L:542-685 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3iasL5 L:375-541 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3iasL8 L:686-777 cradle loop barrel RIFT-related double psi
e3iasM5 M:26-64,M:374-409 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3iasM4 M:65-107,M:301-373 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3iasM6 M:108-300 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e3iasN1 N:1-196 Nqo5-like Nqo5-like Nqo5-like
e3iasO1 O:15-175 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3iasP1 P:26-179 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e3iasQ1 Q:3-129 Type III secretory system chaperone-like Frataxin-like Frataxin-like
e3iasS3 S:2-249 Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like
e3iasS2 S:250-333 beta-Grasp Ubiquitin-related Nqo1 middle domain-like
e3iasS1 S:334-438 Bromodomain-like Nqo1C-terminal domain-like Nqo1C-terminal domain-like
e3iasT2 T:3-74 NQO2 helical bundle domain NQO2 helical bundle domain NQO2 helical bundle domain
e3iasT1 T:75-180 Thioredoxin-like Thioredoxin-like Thioredoxin-like
e3iasU4 U:1-95 beta-Grasp Ubiquitin-related Ubiquitin-like
e3iasU9 U:96-161 iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin
e3iasU7 U:162-246 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e3iasU10 U:247-304 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1
e3iasU6 U:305-379,U:542-685 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3iasU5 U:375-541 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e3iasU8 U:686-777 cradle loop barrel RIFT-related double psi
e3iasV5 V:26-64,V:374-409 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3iasV4 V:65-107,V:301-373 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e3iasV6 V:108-300 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e3iasW1 W:1-196 Nqo5-like Nqo5-like Nqo5-like
e3iasX1 X:15-175 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e3iasY1 Y:26-179 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e3iasZ1 Z:3-129 Type III secretory system chaperone-like Frataxin-like Frataxin-like

Structural contacts of domain e3iasC9 of H-group "iron-sulfur center-binding helical hairpin":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3iasA1 C:x,y,z->A:X,Y,Z Nqo1C-terminal domain-like Interaction Interface Pymol
e3iasE1 C:X,Y,Z->E:x,y,z Nqo5-like Interaction Interface Pymol
e3iasH1 C:X,Y,Z->H:x,y,z Frataxin-like Interaction Interface Pymol
e3iasD4 C:X,Y,Z->D:x,y,z Ni-Fe binding domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e3iasG1 C:X,Y,Z->G:x,y,z 4Fe-4S ferredoxin Interaction Interface Pymol