Domain ID e3idyA1

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  • A: a+b two layers
  • X: gp120 inner domain
  • H: gp120 inner domain
  • T: gp120 inner domain
  • F: GP120
UID: 001829533
Type: Automatic domain
Parent: e2nxyA3
Range: A:83-255,A:474-492
Ligands: NAG
PDB: 3idy
PDB Description: HIV-1 HxBc2 gp120 core
UniProt: P04578
Species: Human immunodeficiency virus 1

Structure of domain e3idyA1

Domains in the same chain:

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e3idyA1 A:83-255,A:474-492 gp120 inner domain gp120 inner domain gp120 inner domain
e3idyA2 A:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain

Domains in the same PDB:

e3idyA1 A:83-255,A:474-492 gp120 inner domain gp120 inner domain gp120 inner domain
e3idyA2 A:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e3idyB1 B:1-113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3idyB2 B:114-216 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3idyC1 C:1-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3idyC2 C:108-213 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3idyG2 G:83-255,G:474-492 gp120 inner domain gp120 inner domain gp120 inner domain
e3idyG1 G:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e3idyH1 H:1-113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3idyH2 H:114-216 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3idyL1 L:1-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3idyL2 L:108-213 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e3idyA1 of H-group "gp120 inner domain":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3idyA1 A:x,y,z->A:-X+2,Y,-Z-1/2 gp120 inner domain Interaction Interface Pymol
e3idyA2 A:x,y,z->A:-X+2,Y,-Z-1/2 Ribosomal protein L31e/gp120 outer domain Interaction Interface Pymol
e3idyA1 A:-X+2,Y,-Z-1/2->A:x,y,z gp120 inner domain Interaction Interface Pymol
e3idyA2 A:-X+2,Y,-Z-1/2->A:x,y,z Ribosomal protein L31e/gp120 outer domain Interaction Interface Pymol
e3idyC2 A:X,-Y,-Z->C:x,y,z Immunoglobulin-related Interaction Interface Pymol
e3idyB2 A:X,-Y,-Z->B:x,y,z Immunoglobulin-related Interaction Interface Pymol