ECOD: domain e3ikmA2

Domain ID e3ikmA2

A: alpha bundles
X: "fingers" domain in bacteriophage RB69-like DNA polymerase I
H: "fingers" domain in bacteriophage RB69-like DNA polymerase I
T: "fingers" domain in bacteriophage RB69-like DNA polymerase I
F: Unmapped domains

UID:	001117630
Type:	Manual and representative domain
Range:	A:418-881
PDB:	3ikm
PDB Description:	DNA polymerase subunit gamma-1
UniProt:	P54098
Hsap BLAST neighbor:	P54098
Species:	Homo sapiens

Domains in the same chain:

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e3ikmA1	A:70-417	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e3ikmA2	A:418-881	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e3ikmA3	A:882-910,A:1098-1239	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e3ikmA4	A:911-1097	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

Structural contacts of domain e3ikmA2 of H-group ""fingers" domain in bacteriophage RB69-like DNA polymerase I":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e3ikmC6	A:X,Y,Z->C:x,y,z	Anticodon-binding domain of Class II aaRS	Interaction Interface Pymol
e3ikmC5	A:X,Y,Z->C:x,y,z	Class II aaRS and biotin synthetases	Interaction Interface Pymol
e3ikmD5	A:x,y,z->D:X,Y-1,Z	"fingers" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e3ikmD6	A:x,y,z->D:X-1,Y-1,Z	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	Interaction Interface Pymol
e3ikmD5	A:x,y,z->D:X-1,Y-1,Z	"fingers" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e3ikmD8	A:x,y,z->D:X-1,Y-1,Z	Ribonuclease H-like	Interaction Interface Pymol
e3ikmF5	A:x,y,z->F:-Y+2,X-Y-2,Z-1/3	Class II aaRS and biotin synthetases	Interaction Interface Pymol
e3ikmD5	A:x,y,z->D:-Y+2,X-Y-1,Z-1/3	"fingers" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e3ikmE3	A:x,y,z->E:-Y+2,X-Y-1,Z-1/3	Class II aaRS and biotin synthetases	Interaction Interface Pymol