Domain ID e3in5B1

Download files:
  • A: alpha arrays
  • X: HhH/H2TH
  • H: SAM/DNA-glycosylase
  • T: SAM domain-like
  • F: IMS_HHH
UID: 000372291
Type: Automatic domain
Parent: e1jx4A1
Range: B:346-405
Ligands: MG
PDB: 3in5
PDB Description: DNA POLYMERASE KAPPA
UniProt: Q9UBT6
Hsap BLAST neighbor: Q9UBT6
Species: Homo sapiens

Structure of domain e3in5B1

Domains in the same chain:

Download Pymol

e3in5B3 B:22-121,B:170-223,B:284-345 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3in5B4 B:122-169 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e3in5B1 B:346-405 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3in5B2 B:406-518 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Domains in the same PDB:

e3in5A5 A:25-121,A:170-223,A:281-345 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3in5A4 A:122-169 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e3in5A1 A:346-405 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3in5A2 A:406-518 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain
e3in5B3 B:22-121,B:170-223,B:284-345 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3in5B4 B:122-169 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e3in5B1 B:346-405 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3in5B2 B:406-518 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Structural contacts of domain e3in5B1 of H-group "SAM/DNA-glycosylase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3in5A1 B:x,y,z->A:X,Y,Z SAM/DNA-glycosylase Interaction Interface Pymol
e3in5A5 B:x,y,z->A:X,Y,Z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol