Domain ID e3j01W1

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  • A: a+b complex topology
  • X: alpha/beta-Hammerhead/Barrel-sandwich hybrid
  • H: alpha/beta-Hammerhead/Barrel-sandwich hybrid
  • T: Ribosomal L27 protein
  • F: Ribosomal_L27
UID: 000417380
Type: Automatic domain
Parent: e3j6bR1
Range: W:1-84
PDB: 3j01
PDB Description:
Hsap BLAST neighbor: Q9P0M9
Species:

Structure of domain e3j01W1

Domains in the same chain:

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e3j01W1 W:1-84 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein

Domains in the same PDB:

e3j0101 0:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3j0121 2:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e3j0131 3:1-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e3j0141 4:1-38 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e3j0156 5:1-68,5:160-234 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e3j0155 5:69-159 Flavodoxin-like Rossmann-like domain in Ribosomal protein L1 Rossmann-like domain in Ribosomal protein L1
e3j0161 6:1-124 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3j0162 6:125-272 SH3 SH3 SH3
e3j01A1 A:8-442 Preprotein translocase SecY subunit Preprotein translocase SecY subunit Preprotein translocase SecY subunit
e3j01B1 B:12-127 Preprotein translocase SecE subunit Preprotein translocase SecE subunit Preprotein translocase SecE subunit
e3j01E1 E:1-201 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3j01F1 F:1-178 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3j01G2 G:1-81 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3j01G1 G:82-176 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3j01H2 H:1-55 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e3j01I2 I:1-71 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e3j01I1 I:72-141 HTH HTH Ribosomal protein L11, C-terminal domain
e3j01J1 J:1-142 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3j01K1 K:1-123 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3j01N1 N:1-127 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e3j01O1 O:1-117 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3j01R1 R:1-103 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e3j01S1 S:1-110 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3j01T1 T:1-100 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3j01U1 U:1-103 SH3 SH3 SH3
e3j01V1 V:1-94 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3j01W1 W:1-84 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3j01X1 X:1-77 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e3j01Y1 Y:1-63 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3j01Z1 Z:1-58 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e

Structural contacts of domain e3j01W1 of H-group "alpha/beta-Hammerhead/Barrel-sandwich hybrid":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3j01O1 W:X,Y,Z->O:x,y,z Ribonuclease H-like Interaction Interface Pymol
e3j01O1 W:X,Y,Z->M:x,y,z Ribonuclease H-like Interaction Interface Pymol