Domain ID e3j0cF1

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  • A: beta barrels
  • X: cradle loop barrel
  • H: RIFT-related
  • T: FMN-binding split barrel
  • F: Peptidase_S3
UID: 000427406
Type: Automatic domain
Parent: e1wykA1
Range: F:114-275
PDB: 3j0c
PDB Description: Capsid protein
UniProt: P05674
Species:

Structure of domain e3j0cF1

Domains in the same chain:

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e3j0cF1 F:114-275 cradle loop barrel RIFT-related FMN-binding split barrel

Domains in the same PDB:

e3j0cA1 A:1-293 Viral glycoprotein, central and dimerisation domains-like Viral glycoprotein, central and dimerisation domains Viral glycoprotein, central and dimerisation domains
e3j0cA2 A:294-381 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3j0cA3 A:385-442 Transmembrane helix of E1 envelope glycoprotein Transmembrane helix of E1 envelope glycoprotein Transmembrane helix of E1 envelope glycoprotein
e3j0cB1 B:1-136 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3j0cB2 B:137-270 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3j0cB3 B:270-342 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3j0cC1 C:114-275 cradle loop barrel RIFT-related FMN-binding split barrel
e3j0cD1 D:1-293 Viral glycoprotein, central and dimerisation domains-like Viral glycoprotein, central and dimerisation domains Viral glycoprotein, central and dimerisation domains
e3j0cD2 D:294-381 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3j0cD3 D:384-442 Transmembrane helix of E1 envelope glycoprotein Transmembrane helix of E1 envelope glycoprotein Transmembrane helix of E1 envelope glycoprotein
e3j0cE1 E:1-136 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3j0cE2 E:137-270 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3j0cE3 E:270-342 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3j0cF1 F:114-275 cradle loop barrel RIFT-related FMN-binding split barrel
e3j0cG1 G:1-293 Viral glycoprotein, central and dimerisation domains-like Viral glycoprotein, central and dimerisation domains Viral glycoprotein, central and dimerisation domains
e3j0cG2 G:294-381 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3j0cG3 G:384-442 Transmembrane helix of E1 envelope glycoprotein Transmembrane helix of E1 envelope glycoprotein Transmembrane helix of E1 envelope glycoprotein
e3j0cH1 H:1-136 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3j0cH2 H:137-270 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3j0cH3 H:270-342 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3j0cI1 I:114-275 cradle loop barrel RIFT-related FMN-binding split barrel
e3j0cJ1 J:1-293 Viral glycoprotein, central and dimerisation domains-like Viral glycoprotein, central and dimerisation domains Viral glycoprotein, central and dimerisation domains
e3j0cJ2 J:294-381 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3j0cJ3 J:384-442 Transmembrane helix of E1 envelope glycoprotein Transmembrane helix of E1 envelope glycoprotein Transmembrane helix of E1 envelope glycoprotein
e3j0cK1 K:1-136 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3j0cK2 K:137-270 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3j0cK3 K:270-342 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3j0cL1 L:114-275 cradle loop barrel RIFT-related FMN-binding split barrel

Structural contacts of domain e3j0cF1 of H-group "RIFT-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3j0cD3 F:X,Y,Z->D:x,y,z Transmembrane helix of E1 envelope glycoprotein Interaction Interface Pymol