Domain ID e3j0yY1

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  • A: a+b complex topology
  • X: alpha/beta-Hammerhead/Barrel-sandwich hybrid
  • H: alpha/beta-Hammerhead/Barrel-sandwich hybrid
  • T: Ribosomal L27 protein
  • F: Ribosomal_L27
UID: 000977137
Type: Automatic domain
Parent: e3j6bR1
Range: Y:1-74
PDB: 3j0y
PDB Description:
Hsap BLAST neighbor: Q9P0M9
Species:

Structure of domain e3j0yY1

Domains in the same chain:

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e3j0yY1 Y:1-74 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein

Domains in the same PDB:

e3j0y01 0:1-63 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3j0y11 1:1-57 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e3j0y21 2:1-70 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e3j0y32 3:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3j0y51 5:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e3j0y61 6:1-63 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e3j0y71 7:1-38 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e3j0yC4 C:1-68,C:160-234 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e3j0yC3 C:69-159 Flavodoxin-like Rossmann-like domain in Ribosomal protein L1 Rossmann-like domain in Ribosomal protein L1
e3j0yD5 D:1-124 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3j0yD6 D:125-272 SH3 SH3 SH3
e3j0yF1 F:1-201 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3j0yG1 G:1-176 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3j0yH3 H:1-81 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3j0yH4 H:82-176 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3j0yI6 I:1-54 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e3j0yJ1 J:1-164 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e3j0yK2 K:1-69 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e3j0yK1 K:70-140 HTH HTH Ribosomal protein L11, C-terminal domain
e3j0yL1 L:1-142 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3j0yM1 M:1-123 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3j0yP1 P:1-127 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e3j0yQ1 Q:1-117 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3j0yT1 T:1-103 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e3j0yU1 U:1-110 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3j0yV1 V:1-100 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3j0yW2 W:1-103 SH3 SH3 SH3
e3j0yX1 X:1-94 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3j0yY1 Y:1-74 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3j0yZ1 Z:1-76 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28

Structural contacts of domain e3j0yY1 of H-group "alpha/beta-Hammerhead/Barrel-sandwich hybrid":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3j6bR1 Y:X,Y,Z->O:x,y,z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e3j0yQ1 Y:X,Y,Z->Q:x,y,z Ribonuclease H-like Interaction Interface Pymol