Domain ID e3j16B5

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  • A: a+b two layers
  • X: 4Fe-4S ferredoxin
  • H: 4Fe-4S ferredoxin
  • T: 4Fe-4S ferredoxin
  • F: Fer4,RLI
UID: 001167704
Type: Automatic and representative domain
Parent: e3j15B8
Range: B:1-77
Ligands: SF4
PDB: 3j16
PDB Description: Rli1p
UniProt: Q03195
Hsap BLAST neighbor: P61221
Species: Saccharomyces cerevisiae

Structure of domain e3j16B5

Domains in the same chain:

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e3j16B5 B:1-77 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e3j16B4 B:78-333 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3j16B6 B:334-608 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases

Domains in the same PDB:

e3j16A8 A:1-122 SH3 Dom34/Pelota N-terminal domain-like Dom34/Pelota N-terminal domain-like
e3j16A7 A:123-255 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3j16A9 A:256-386 Bacillus chorismate mutase-like L30e-like L30e-like
e3j16B5 B:1-77 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e3j16B4 B:78-333 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3j16B6 B:334-608 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e3j16C1 C:1-226 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3j16D1 D:2-135 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3j16E1 E:7-61 40S ribosomal protein S30 (S30e) 40S ribosomal protein S30 (S30e) 40S ribosomal protein S30 (S30e)
e3j16F2 F:1-85 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3j16F1 F:86-191 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3j16G1 G:1-107,G:181-199 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e3j16G2 G:108-180 Insertion domain in 60S ribosomal protein rpP0 (L10P) Insertion domain in 60S ribosomal protein rpP0 (L10P) Insertion domain in 60S ribosomal protein rpP0 (L10P)
e3j16H3 H:7-75 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e3j16H4 H:76-144 HTH HTH Ribosomal protein L11, C-terminal domain
e3j16I1 I:2-137 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related

Structural contacts of domain e3j16B5 of H-group "4Fe-4S ferredoxin":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3j16A9 B:X,Y,Z->A:x,y,z L30e-like Interaction Interface Pymol