Domain ID e3j3vE1

Download files:
  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L4
  • H: Ribosomal protein L4
  • T: Ribosomal protein L4
  • F: Ribosomal_L4
UID: 001030252
Type: Automatic domain
Parent: e1dmgA1
Range: E:2-207
PDB: 3j3v
PDB Description: 50S ribosomal protein L4
UniProt: P42921
Hsap BLAST neighbor: Q9BYD3
Species:

Structure of domain e3j3vE1

Domains in the same chain:

Download Pymol

e3j3vE1 E:2-207 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4

Domains in the same PDB:

e3j3v01 0:2-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3j3v21 2:1-44 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e3j3v51 5:2-58,5:166-228 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e3j3v63 6:1-73 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e3j3v64 6:74-141 HTH HTH Ribosomal protein L11, C-terminal domain
e3j3vC1 C:1-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3j3vC2 C:126-277 SH3 SH3 SH3
e3j3vD1 D:3-208 cradle loop barrel RIFT-related Alanine racemase-C
e3j3vE1 E:2-207 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3j3vF1 F:1-179 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3j3vG1 G:9-83 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3j3vG2 G:84-171 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3j3vJ1 J:1-143 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3j3vK1 K:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3j3vL1 L:1-146 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e3j3vN1 N:1-120 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e3j3vO1 O:1-120 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3j3vP1 P:3-114 SH3 SH3 SH3
e3j3vQ1 Q:2-118 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e3j3vR1 R:1-102 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e3j3vS1 S:1-112 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3j3vT1 T:1-95 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3j3vU1 U:1-103 SH3 SH3 SH3
e3j3vX1 X:1-61 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3j3vY1 Y:3-58 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e

Structural contacts of domain e3j3vE1 of H-group "Ribosomal protein L4":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1dmgA1 E:x,y,z->L:X,Y,Z Ribosomal protein L4 Interaction Interface Pymol
e1dmgA1 E:x,y,z->Q:X,Y,Z Ribosomal protein L4 Interaction Interface Pymol
e3j3v21 E:X,Y,Z->2:x,y,z 50S ribosomal protein L34 Interaction Interface Pymol