Domain ID e3j4fA2

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  • A: alpha bundles
  • X: Retrovirus capsid protein
  • H: Retrovirus capsid protein-C
  • T: Retrovirus capsid protein-C
  • F: Gag_p24_C
UID: 001086850
Type: Automatic domain
Parent: e1a8oA1
Range: A:149-231
PDB: 3j4f
PDB Description: capsid protein
UniProt: Q79791
Hsap BLAST neighbor: P63145
Species: Human immunodeficiency virus 1

Structure of domain e3j4fA2

Domains in the same chain:

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e3j4fA1 A:1-148 Retrovirus capsid protein Retrovirus capsid protein N-terminal domain Retrovirus capsid protein N-terminal domain
e3j4fA2 A:149-231 Retrovirus capsid protein Retrovirus capsid protein-C Retrovirus capsid protein-C

Domains in the same PDB:

e3j4fA1 A:1-148 Retrovirus capsid protein Retrovirus capsid protein N-terminal domain Retrovirus capsid protein N-terminal domain
e3j4fA2 A:149-231 Retrovirus capsid protein Retrovirus capsid protein-C Retrovirus capsid protein-C
e3j4fB1 B:1-148 Retrovirus capsid protein Retrovirus capsid protein N-terminal domain Retrovirus capsid protein N-terminal domain
e3j4fB2 B:149-231 Retrovirus capsid protein Retrovirus capsid protein-C Retrovirus capsid protein-C
e3j4fC1 C:1-148 Retrovirus capsid protein Retrovirus capsid protein N-terminal domain Retrovirus capsid protein N-terminal domain
e3j4fC2 C:149-231 Retrovirus capsid protein Retrovirus capsid protein-C Retrovirus capsid protein-C
e3j4fD1 D:1-148 Retrovirus capsid protein Retrovirus capsid protein N-terminal domain Retrovirus capsid protein N-terminal domain
e3j4fD2 D:149-231 Retrovirus capsid protein Retrovirus capsid protein-C Retrovirus capsid protein-C
e3j4fE1 E:1-148 Retrovirus capsid protein Retrovirus capsid protein N-terminal domain Retrovirus capsid protein N-terminal domain
e3j4fE2 E:149-231 Retrovirus capsid protein Retrovirus capsid protein-C Retrovirus capsid protein-C
e3j4fF1 F:1-148 Retrovirus capsid protein Retrovirus capsid protein N-terminal domain Retrovirus capsid protein N-terminal domain
e3j4fF2 F:149-231 Retrovirus capsid protein Retrovirus capsid protein-C Retrovirus capsid protein-C

Structural contacts of domain e3j4fA2 of H-group "Retrovirus capsid protein-C":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3j4fF1 A:x,y,z->F:X,Y,Z Retrovirus capsid protein N-terminal domain Interaction Interface Pymol