Domain ID e3j5kE1

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L4
  • H: Ribosomal protein L4
  • T: Ribosomal protein L4
  • F: Ribosomal_L4
UID: 001110470
Type: Automatic domain
Parent: e1dmgA1
Range: E:1-201
PDB: 3j5k
PDB Description:
Hsap BLAST neighbor: Q9BYD3
Species:

Structure of domain e3j5kE1

Domains in the same chain:

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e3j5kE1 E:1-201 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4

Domains in the same PDB:

e3j5k01 0:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3j5k21 2:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e3j5k31 3:1-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e3j5k41 4:1-38 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e3j5k54 5:2-68,5:160-224 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e3j5k53 5:69-159 Flavodoxin-like Rossmann-like domain in Ribosomal protein L1 Rossmann-like domain in Ribosomal protein L1
e3j5kC1 C:1-124 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3j5kC2 C:125-272 SH3 SH3 SH3
e3j5kE1 E:1-201 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3j5kF1 F:1-178 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3j5kG2 G:1-81 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3j5kG1 G:82-176 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3j5kH1 H:1-55 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e3j5kI2 I:1-71 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e3j5kI1 I:72-141 HTH HTH Ribosomal protein L11, C-terminal domain
e3j5kJ1 J:1-142 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3j5kK1 K:1-123 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3j5kN1 N:1-121 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e3j5kO1 O:2-117 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3j5kR1 R:1-103 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e3j5kS1 S:1-110 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3j5kT1 T:1-94 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3j5kU1 U:1-103 SH3 SH3 SH3
e3j5kV1 V:1-94 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3j5kW1 W:5-84 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3j5kX1 X:1-77 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e3j5kY1 Y:1-63 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3j5kZ1 Z:1-58 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e

Structural contacts of domain e3j5kE1 of H-group "Ribosomal protein L4":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1dmgA1 E:x,y,z->L:X,Y,Z Ribosomal protein L4 Interaction Interface Pymol