Domain ID e3j5lJ1

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L13/L15p/L18e/L32e
  • H: Ribosomal protein L13 and L16-A
  • T: Ribosomal protein L13 and L16-A
  • F: Ribosomal_L13
UID: 001147848
Type: Automatic domain
Parent: e4v19N1
Range: J:1-142
PDB: 3j5l
PDB Description: 50S ribosomal protein L13
UniProt: P0AA10
Hsap BLAST neighbor: Q9BYD1
Species:

Structure of domain e3j5lJ1

Domains in the same chain:

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e3j5lJ1 J:1-142 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A

Domains in the same PDB:

e3j5l01 0:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3j5l11 1:3-52 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3j5l21 2:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e3j5l31 3:1-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e3j5l41 4:1-38 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e3j5lC1 C:1-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3j5lC2 C:126-271 SH3 SH3 SH3
e3j5lD1 D:1-209 cradle loop barrel RIFT-related Alanine racemase-C
e3j5lE1 E:1-201 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3j5lF1 F:1-177 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3j5lG1 G:1-81 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3j5lG2 G:82-176 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3j5lH1 H:1-56 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e3j5lI1 I:1-71 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e3j5lI2 I:72-141 HTH HTH Ribosomal protein L11, C-terminal domain
e3j5lJ1 J:1-142 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3j5lK1 K:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3j5lL1 L:2-144 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e3j5lM1 M:1-136 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e3j5lN1 N:1-120 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e3j5lO1 O:2-117 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3j5lP1 P:1-114 SH3 SH3 SH3
e3j5lQ1 Q:1-117 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e3j5lR1 R:1-103 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e3j5lS1 S:1-110 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3j5lT1 T:1-93 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3j5lU1 U:1-102 SH3 SH3 SH3
e3j5lV1 V:1-94 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3j5lW1 W:6-84 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3j5lX1 X:1-77 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e3j5lY1 Y:1-63 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3j5lZ1 Z:1-58 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e

Structural contacts of domain e3j5lJ1 of H-group "Ribosomal protein L13 and L16-A":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4v19N1 J:x,y,z->Q:X,Y,Z Ribosomal protein L13 and L16-A Interaction Interface Pymol
e4v19N1 J:X,Y,Z->D:x,y,z Ribosomal protein L13 and L16-A Interaction Interface Pymol
e3j5lR1 J:x,y,z->R:X,Y,Z Ribosomal protein L21p Interaction Interface Pymol