Domain ID e3j5mA3

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  • A: a+b two layers
  • X: gp120 inner domain
  • H: gp120 inner domain
  • T: gp120 inner domain
  • F: GP120
UID: 001829537
Type: Automatic domain
Parent: e4tvpG3
Range: A:44-119,A:203-255,A:474-492
PDB: 3j5m
PDB Description: BG505 SOSIP gp120
UniProt: Q2N0S6
Species: Human immunodeficiency virus 1

Structure of domain e3j5mA3

Domains in the same chain:

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e3j5mA3 A:44-119,A:203-255,A:474-492 gp120 inner domain gp120 inner domain gp120 inner domain
e3j5mA2 A:120-178,A:191-202 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120
e3j5mA1 A:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain

Domains in the same PDB:

e3j5mA3 A:44-119,A:203-255,A:474-492 gp120 inner domain gp120 inner domain gp120 inner domain
e3j5mA2 A:120-178,A:191-202 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120
e3j5mA1 A:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e3j5mC2 C:1-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3j5mC1 C:108-214 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3j5mD2 D:1-113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3j5mD1 D:114-215 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3j5mE2 E:44-119,E:203-255,E:474-492 gp120 inner domain gp120 inner domain gp120 inner domain
e3j5mE3 E:120-178,E:191-202 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120
e3j5mE1 E:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e3j5mG2 G:1-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3j5mG1 G:108-214 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3j5mH2 H:1-113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3j5mH1 H:114-215 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3j5mI2 I:44-119,I:203-255,I:474-492 gp120 inner domain gp120 inner domain gp120 inner domain
e3j5mI1 I:120-178,I:191-202 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120 V1/V2 domain in HIV gp120
e3j5mI3 I:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e3j5mK2 K:1-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3j5mK1 K:108-214 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3j5mL2 L:1-113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3j5mL1 L:114-215 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e3j5mA3 of H-group "gp120 inner domain":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3j5mD2 A:x,y,z->D:X,Y,Z Immunoglobulin-related Interaction Interface Pymol
e3j5mH2 A:x,y,z->H:X,Y,Z Immunoglobulin-related Interaction Interface Pymol