Domain ID e3j5uX1

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  • A: beta barrels
  • X: Ribosomal protein L25-like
  • H: Ribosomal protein L25-like
  • T: Ribosomal protein L25-like
  • F: Ribosomal_L25p
UID: 001124994
Type: Automatic domain
Parent: e1dfuP1
Range: X:1-94
PDB: 3j5u
PDB Description:
Species:

Structure of domain e3j5uX1

Domains in the same chain:

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e3j5uX1 X:1-94 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like

Domains in the same PDB:

e3j5u11 1:1-63 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3j5u21 2:1-58 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e3j5u31 3:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3j5u51 5:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e3j5u61 6:1-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e3j5u71 7:1-38 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e3j5uC4 C:3-68,C:160-227 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e3j5uC3 C:69-159 Flavodoxin-like Rossmann-like domain in Ribosomal protein L1 Rossmann-like domain in Ribosomal protein L1
e3j5uD1 D:1-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3j5uD2 D:126-271 SH3 SH3 SH3
e3j5uF1 F:1-201 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3j5uG1 G:1-177 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3j5uH2 H:1-81 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3j5uH1 H:82-176 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3j5uI1 I:1-53 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e3j5uJ1 J:1-131 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e3j5uK2 K:1-71 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e3j5uK1 K:72-141 HTH HTH Ribosomal protein L11, C-terminal domain
e3j5uL1 L:1-142 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3j5uM1 M:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3j5uP1 P:1-120 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e3j5uQ1 Q:2-117 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3j5uT1 T:1-103 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e3j5uU1 U:1-110 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3j5uV1 V:1-93 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3j5uW1 W:1-102 SH3 SH3 SH3
e3j5uX1 X:1-94 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3j5uY1 Y:6-81 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3j5uZ1 Z:1-77 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28

Structural contacts of domain e3j5uX1 of H-group "Ribosomal protein L25-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1dfuP1 X:X,Y,Z->O:x,y,z Ribosomal protein L25-like Interaction Interface Pymol