Domain ID e3k1qU2

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  • A: beta sandwiches
  • X: jelly-roll
  • H: Jelly-roll domain in membrane penetration protein mu1
  • T: Jelly-roll domain in membrane penetration protein mu1
  • F: Reovirus_M2
UID: 001281382
Type: Automatic domain
Parent: e3iylB2
Range: U:288-471
PDB: 3k1q
PDB Description: Outer capsid VP5
UniProt: Q8JU67
Species:

Structure of domain e3k1qU2

Domains in the same chain:

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e3k1qU1 U:10-250 a+b domain in membrane penetration protein mu1 a+b domain in membrane penetration protein mu1 a+b domain in membrane penetration protein mu1
e3k1qU3 U:251-287,U:472-648 Alpha-helical domain in membrane penetration protein mu1 Alpha-helical domain in membrane penetration protein mu1 Alpha-helical domain in membrane penetration protein mu1
e3k1qU2 U:288-471 jelly-roll Jelly-roll domain in membrane penetration protein mu1 Jelly-roll domain in membrane penetration protein mu1

Domains in the same PDB:

e3k1qA14 A:1-143 Rotavirus NSP2 fragment, N-terminal domain Rotavirus NSP2 fragment, N-terminal domain Rotavirus NSP2 fragment, N-terminal domain
e3k1qA9 A:144-390 HIT-like HIT-related HIT-related
e3k1qA11 A:391-435,A:681-791 ferredoxin-like domain in VP1 ferredoxin-like domain in VP1 ferredoxin-like domain in VP1
e3k1qA12 A:436-680 Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases
e3k1qA10 A:792-1018 Rossmann-like Rossmann-related S-adenosyl-L-methionine-dependent methyltransferases
e3k1qA15 A:1019-1117 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k1qA13 A:1118-1219 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k1qA16 A:1220-1299 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e3k1qB2 B:188-1214 Inner layer core protein p3-related Inner layer core protein p3-related Inner layer core protein p3-related
e3k1qC2 C:19-148 beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers
e3k1qC1 C:149-1214 Inner layer core protein p3-related Inner layer core protein p3-related Inner layer core protein p3-related
e3k1qD1 D:1-412 Core protein VP6 Core protein VP6 Core protein VP6
e3k1qE1 E:1-412 Core protein VP6 Core protein VP6 Core protein VP6
e3k1qF1 F:1-276 Outer capsid protein sigma 3-related Outer capsid protein sigma 3-related Outer capsid protein sigma 3-related
e3k1qG1 G:1-276 Outer capsid protein sigma 3-related Outer capsid protein sigma 3-related Outer capsid protein sigma 3-related
e3k1qH1 H:1-276 Outer capsid protein sigma 3-related Outer capsid protein sigma 3-related Outer capsid protein sigma 3-related
e3k1qI1 I:10-250 a+b domain in membrane penetration protein mu1 a+b domain in membrane penetration protein mu1 a+b domain in membrane penetration protein mu1
e3k1qI3 I:251-287,I:472-648 Alpha-helical domain in membrane penetration protein mu1 Alpha-helical domain in membrane penetration protein mu1 Alpha-helical domain in membrane penetration protein mu1
e3k1qI2 I:288-471 jelly-roll Jelly-roll domain in membrane penetration protein mu1 Jelly-roll domain in membrane penetration protein mu1
e3k1qJ1 J:10-250 a+b domain in membrane penetration protein mu1 a+b domain in membrane penetration protein mu1 a+b domain in membrane penetration protein mu1
e3k1qJ3 J:251-287,J:472-648 Alpha-helical domain in membrane penetration protein mu1 Alpha-helical domain in membrane penetration protein mu1 Alpha-helical domain in membrane penetration protein mu1
e3k1qJ2 J:288-471 jelly-roll Jelly-roll domain in membrane penetration protein mu1 Jelly-roll domain in membrane penetration protein mu1
e3k1qK1 K:10-250 a+b domain in membrane penetration protein mu1 a+b domain in membrane penetration protein mu1 a+b domain in membrane penetration protein mu1
e3k1qK3 K:251-287,K:472-648 Alpha-helical domain in membrane penetration protein mu1 Alpha-helical domain in membrane penetration protein mu1 Alpha-helical domain in membrane penetration protein mu1
e3k1qK2 K:288-471 jelly-roll Jelly-roll domain in membrane penetration protein mu1 Jelly-roll domain in membrane penetration protein mu1
e3k1qL1 L:1-276 Outer capsid protein sigma 3-related Outer capsid protein sigma 3-related Outer capsid protein sigma 3-related
e3k1qM1 M:1-276 Outer capsid protein sigma 3-related Outer capsid protein sigma 3-related Outer capsid protein sigma 3-related
e3k1qN1 N:1-276 Outer capsid protein sigma 3-related Outer capsid protein sigma 3-related Outer capsid protein sigma 3-related
e3k1qO1 O:10-250 a+b domain in membrane penetration protein mu1 a+b domain in membrane penetration protein mu1 a+b domain in membrane penetration protein mu1
e3k1qO3 O:251-287,O:472-648 Alpha-helical domain in membrane penetration protein mu1 Alpha-helical domain in membrane penetration protein mu1 Alpha-helical domain in membrane penetration protein mu1
e3k1qO2 O:288-471 jelly-roll Jelly-roll domain in membrane penetration protein mu1 Jelly-roll domain in membrane penetration protein mu1
e3k1qP1 P:10-250 a+b domain in membrane penetration protein mu1 a+b domain in membrane penetration protein mu1 a+b domain in membrane penetration protein mu1
e3k1qP3 P:251-287,P:472-648 Alpha-helical domain in membrane penetration protein mu1 Alpha-helical domain in membrane penetration protein mu1 Alpha-helical domain in membrane penetration protein mu1
e3k1qP2 P:288-471 jelly-roll Jelly-roll domain in membrane penetration protein mu1 Jelly-roll domain in membrane penetration protein mu1
e3k1qQ1 Q:10-250 a+b domain in membrane penetration protein mu1 a+b domain in membrane penetration protein mu1 a+b domain in membrane penetration protein mu1
e3k1qQ3 Q:251-287,Q:472-648 Alpha-helical domain in membrane penetration protein mu1 Alpha-helical domain in membrane penetration protein mu1 Alpha-helical domain in membrane penetration protein mu1
e3k1qQ2 Q:288-471 jelly-roll Jelly-roll domain in membrane penetration protein mu1 Jelly-roll domain in membrane penetration protein mu1
e3k1qR1 R:1-276 Outer capsid protein sigma 3-related Outer capsid protein sigma 3-related Outer capsid protein sigma 3-related
e3k1qS1 S:1-276 Outer capsid protein sigma 3-related Outer capsid protein sigma 3-related Outer capsid protein sigma 3-related
e3k1qT1 T:1-276 Outer capsid protein sigma 3-related Outer capsid protein sigma 3-related Outer capsid protein sigma 3-related
e3k1qU1 U:10-250 a+b domain in membrane penetration protein mu1 a+b domain in membrane penetration protein mu1 a+b domain in membrane penetration protein mu1
e3k1qU3 U:251-287,U:472-648 Alpha-helical domain in membrane penetration protein mu1 Alpha-helical domain in membrane penetration protein mu1 Alpha-helical domain in membrane penetration protein mu1
e3k1qU2 U:288-471 jelly-roll Jelly-roll domain in membrane penetration protein mu1 Jelly-roll domain in membrane penetration protein mu1
e3k1qV1 V:10-250 a+b domain in membrane penetration protein mu1 a+b domain in membrane penetration protein mu1 a+b domain in membrane penetration protein mu1
e3k1qV3 V:251-287,V:472-648 Alpha-helical domain in membrane penetration protein mu1 Alpha-helical domain in membrane penetration protein mu1 Alpha-helical domain in membrane penetration protein mu1
e3k1qV2 V:288-471 jelly-roll Jelly-roll domain in membrane penetration protein mu1 Jelly-roll domain in membrane penetration protein mu1
e3k1qW1 W:10-250 a+b domain in membrane penetration protein mu1 a+b domain in membrane penetration protein mu1 a+b domain in membrane penetration protein mu1
e3k1qW3 W:251-287,W:472-648 Alpha-helical domain in membrane penetration protein mu1 Alpha-helical domain in membrane penetration protein mu1 Alpha-helical domain in membrane penetration protein mu1
e3k1qW2 W:288-471 jelly-roll Jelly-roll domain in membrane penetration protein mu1 Jelly-roll domain in membrane penetration protein mu1
e3k1qX1 X:10-250 a+b domain in membrane penetration protein mu1 a+b domain in membrane penetration protein mu1 a+b domain in membrane penetration protein mu1
e3k1qX3 X:251-287,X:472-648 Alpha-helical domain in membrane penetration protein mu1 Alpha-helical domain in membrane penetration protein mu1 Alpha-helical domain in membrane penetration protein mu1
e3k1qX2 X:288-471 jelly-roll Jelly-roll domain in membrane penetration protein mu1 Jelly-roll domain in membrane penetration protein mu1
e3k1qY1 Y:1-276 Outer capsid protein sigma 3-related Outer capsid protein sigma 3-related Outer capsid protein sigma 3-related

Structural contacts of domain e3k1qU2 of H-group "Jelly-roll domain in membrane penetration protein mu1":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3k1qV2 U:x,y,z->V:X,Y,Z Jelly-roll domain in membrane penetration protein mu1 Interaction Interface Pymol
e3k1qW3 U:x,y,z->W:X,Y,Z Alpha-helical domain in membrane penetration protein mu1 Interaction Interface Pymol
e3k1qW2 U:x,y,z->W:X,Y,Z Jelly-roll domain in membrane penetration protein mu1 Interaction Interface Pymol
e3k1qS1 U:X,Y,Z->S:x,y,z Outer capsid protein sigma 3-related Interaction Interface Pymol
e3k1qT1 U:X,Y,Z->T:x,y,z Outer capsid protein sigma 3-related Interaction Interface Pymol