Domain ID e3k4uD1

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  • A: a/b three-layered sandwiches
  • X: Periplasmic binding protein-like II
  • H: Periplasmic binding protein-like II
  • T: Periplasmic binding protein-like II
  • F: SBP_bac_3
UID: 001521256
Type: Automatic domain
Parent: e1wdnA2
Range: D:1-88,D:188-233
Ligands: LYS
PDB: 3k4u
PDB Description: BINDING COMPONENT OF ABC TRANSPORTER
UniProt: Q7MAG0
Species: Wolinella succinogenes

Structure of domain e3k4uD1

Domains in the same chain:

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e3k4uD1 D:1-88,D:188-233 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3k4uD2 D:89-187 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II

Domains in the same PDB:

e3k4uA1 A:1-88,A:188-233 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3k4uA2 A:89-187 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3k4uB1 B:1-88,B:188-233 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3k4uB2 B:89-187 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3k4uC2 C:1-88,C:188-233 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3k4uC1 C:89-187 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3k4uD1 D:1-88,D:188-233 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3k4uD2 D:89-187 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3k4uE2 E:0-88,E:188-233 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3k4uE1 E:89-187 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3k4uF2 F:1-88,F:188-233 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II
e3k4uF1 F:89-187 Periplasmic binding protein-like II Periplasmic binding protein-like II Periplasmic binding protein-like II

Structural contacts of domain e3k4uD1 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3k4uF2 D:X,Y,Z->F:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol
e3k4uC2 D:x,y,z->C:X,Y,Z Periplasmic binding protein-like II Interaction Interface Pymol
e3k4uC1 D:x,y,z->C:X,Y,Z Periplasmic binding protein-like II Interaction Interface Pymol
e3k4uE2 D:x,y,z->E:-X,Y-1/2,-Z Periplasmic binding protein-like II Interaction Interface Pymol
e3k4uA1 D:x,y,z->A:-X,Y-1/2,-Z Periplasmic binding protein-like II Interaction Interface Pymol
e3k4uF1 D:X-1,Y,Z->F:x,y,z Periplasmic binding protein-like II Interaction Interface Pymol