Domain ID e3k58A1

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: DNA_pol_B
UID: 001758597
Type: Automatic domain
Parent: e1tgoA4
Range: A:372-464,A:508-636
Ligands: MG TTP
PDB: 3k58
PDB Description: DNA polymerase II
UniProt: P21189
Species:

Structure of domain e3k58A1

Domains in the same chain:

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e3k58A7 A:-1-39,A:109-148 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3k58A6 A:41-108 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e3k58A5 A:149-367 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3k58A1 A:372-464,A:508-636 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3k58A2 A:465-507 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3k58A3 A:637-783 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e3k58A7 A:-1-39,A:109-148 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3k58A6 A:41-108 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e3k58A5 A:149-367 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3k58A1 A:372-464,A:508-636 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3k58A2 A:465-507 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3k58A3 A:637-783 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e3k58A1 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3k58A3 A:x,y,z->A:-X+1/2,-Y,Z-1/2 "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e3k58A3 A:x,y,z->A:-X+1/2,-Y,Z-1/2 "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e3k58A3 A:x,y,z->A:X-1,Y,Z "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e3k58A3 A:x,y,z->A:X-1/2,-Y+1/2,-Z "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e3k58A1 A:x,y,z->A:X-1/2,-Y+1/2,-Z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3k58A1 A:X-1/2,-Y+1/2,-Z->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3k58A3 A:-X+1,Y-1/2,-Z+1/2->A:x,y,z "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol