Domain ID e3k59A2

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Family B DNA polymerase insertion domain
  • T: Family B DNA polymerase insertion domain
  • F: DNApolII_insertion
UID: 001710852
Type: Automatic domain
Parent: e1q8iA5
Range: A:41-108
PDB: 3k59
PDB Description: DNA polymerase II
UniProt: P21189
Species:

Structure of domain e3k59A2

Domains in the same chain:

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e3k59A6 A:-1-40,A:110-124,A:146-149 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3k59A2 A:41-108 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e3k59A7 A:149-367 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3k59A3 A:372-464,A:508-636 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3k59A5 A:465-507 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3k59A1 A:637-780 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e3k59A6 A:-1-40,A:110-124,A:146-149 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3k59A2 A:41-108 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e3k59A7 A:149-367 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3k59A3 A:372-464,A:508-636 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3k59A5 A:465-507 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3k59A1 A:637-780 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e3k59A2 of H-group "Family B DNA polymerase insertion domain":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3k59A1 A:x,y,z->A:X-1,Y,Z "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e3k59A1 A:x,y,z->A:-X,Y-1/2,-Z+1/2 "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol