Domain ID e3k5oA21

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  • A: alpha bundles
  • X: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • H: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • T: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • F: Unmapped domains
UID: 001819565
Type: Automatic domain
Parent: e1q8iA2
Range: A:465-507
PDB: 3k5o
PDB Description: DNA polymerase II
UniProt: P21189
Species:

Structure of domain e3k5oA21

Domains in the same chain:

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e3k5oA6 A:2-39,A:109-148 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3k5oA23 A:41-108 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e3k5oA5 A:149-366 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3k5oA19 A:372-464,A:508-636 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3k5oA21 A:465-507 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3k5oA18 A:637-783 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e3k5oA6 A:2-39,A:109-148 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3k5oA23 A:41-108 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e3k5oA5 A:149-366 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3k5oA19 A:372-464,A:508-636 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3k5oA21 A:465-507 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3k5oA18 A:637-783 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I
e3k5oB6 B:2-39,B:109-148 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3k5oB20 B:41-108 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e3k5oB5 B:149-367 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3k5oB23 B:372-464,B:508-636 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3k5oB21 B:465-507 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e3k5oB19 B:637-783 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e3k5oA21 of H-group ""fingers" domain in bacteriophage RB69-like DNA polymerase I":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3k5oB20 A:x,y,z->B:-X,Y-1/2,-Z-1/2 Family B DNA polymerase insertion domain Interaction Interface Pymol
e3k5oB23 A:x,y,z->B:-X,Y-1/2,-Z-1/2 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e3k5oB23 A:x,y,z->A:-X,Y-1/2,-Z-1/2 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol