Domain ID e3kcrA1

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  • A: alpha complex topology
  • X: Preprotein translocase SecY subunit
  • H: Preprotein translocase SecY subunit
  • T: Preprotein translocase SecY subunit
  • F: SecY,Plug_translocon
UID: 000138316
Type: Automatic domain
Parent: e1rh5A1
Range: A:2-443
PDB: 3kcr
PDB Description:
Hsap BLAST neighbor: P61619
Species:

Structure of domain e3kcrA1

Domains in the same chain:

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e3kcrA1 A:2-443 Preprotein translocase SecY subunit Preprotein translocase SecY subunit Preprotein translocase SecY subunit

Domains in the same PDB:

e3kcr01 0:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e3kcr21 2:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e3kcr31 3:1-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e3kcr41 4:1-38 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e3kcr54 5:1-68,5:160-234 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e3kcr53 5:69-159 Flavodoxin-like Rossmann-like domain in Ribosomal protein L1 Rossmann-like domain in Ribosomal protein L1
e3kcr61 6:1-124 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e3kcr62 6:125-271 SH3 SH3 SH3
e3kcrA1 A:2-443 Preprotein translocase SecY subunit Preprotein translocase SecY subunit Preprotein translocase SecY subunit
e3kcrB1 B:2-66 Preprotein translocase SecE subunit Preprotein translocase SecE subunit Preprotein translocase SecE subunit
e3kcrC1 C:21-52 Sec-beta subunit Sec-beta subunit Sec-beta subunit
e3kcrE1 E:1-201 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e3kcrF1 F:1-178 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e3kcrG2 G:1-81 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3kcrG1 G:82-176 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e3kcrH4 H:1-54 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e3kcrI2 I:1-71 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e3kcrI1 I:72-141 HTH HTH Ribosomal protein L11, C-terminal domain
e3kcrJ1 J:1-142 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e3kcrK1 K:1-121 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e3kcrN1 N:1-120 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e3kcrO1 O:2-117 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e3kcrR1 R:1-103 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e3kcrS1 S:1-110 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e3kcrT1 T:1-93 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e3kcrU1 U:1-102 SH3 SH3 SH3
e3kcrV1 V:1-94 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e3kcrW2 W:28-84 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e3kcrX1 X:1-77 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e3kcrY1 Y:1-63 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e3kcrZ1 Z:1-58 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e

Structural contacts of domain e3kcrA1 of H-group "Preprotein translocase SecY subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3kcrB1 A:x,y,z->B:X,Y,Z Preprotein translocase SecE subunit Interaction Interface Pymol
e3kcrC1 A:x,y,z->C:X,Y,Z Sec-beta subunit Interaction Interface Pymol
e3kcrU1 A:x,y,z->U:X,Y,Z SH3 Interaction Interface Pymol
e3kcrT1 A:x,y,z->T:X,Y,Z Ribosomal proteins S24e, L23 and L15e Interaction Interface Pymol
e3kcrY1 A:x,y,z->Y:X,Y,Z Ribosomal protein L29 (L29p) Interaction Interface Pymol