Domain ID e3kdnE1

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: RuBisCO, large subunit, small (N-terminal) domain
  • T: RuBisCO, large subunit, small (N-terminal) domain
  • F: RuBisCO_large_N
UID: 000401966
Type: Automatic domain
Parent: e2d69A1
Range: E:7-136
Ligands: CAP MG
PDB: 3kdn
PDB Description: Ribulose bisphosphate carboxylase
UniProt: O93627
Species:

Structure of domain e3kdnE1

Domains in the same chain:

e3kdnE1 E:7-136 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e3kdnE2 E:137-444 TIM beta/alpha-barrel TIM barrels TIM barrels

Domains in the same PDB:

e3kdnA1 A:8-136 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e3kdnA2 A:137-444 TIM beta/alpha-barrel TIM barrels TIM barrels
e3kdnB1 B:8-136 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e3kdnB2 B:137-444 TIM beta/alpha-barrel TIM barrels TIM barrels
e3kdnC1 C:8-136 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e3kdnC2 C:137-444 TIM beta/alpha-barrel TIM barrels TIM barrels
e3kdnD1 D:8-136 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e3kdnD2 D:137-444 TIM beta/alpha-barrel TIM barrels TIM barrels
e3kdnE1 E:7-136 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e3kdnE2 E:137-444 TIM beta/alpha-barrel TIM barrels TIM barrels
e3kdnF1 F:8-136 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e3kdnF2 F:137-444 TIM beta/alpha-barrel TIM barrels TIM barrels
e3kdnG1 G:8-136 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e3kdnG2 G:137-444 TIM beta/alpha-barrel TIM barrels TIM barrels
e3kdnH1 H:7-136 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e3kdnH2 H:137-444 TIM beta/alpha-barrel TIM barrels TIM barrels
e3kdnI1 I:9-136 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e3kdnI2 I:137-444 TIM beta/alpha-barrel TIM barrels TIM barrels
e3kdnJ1 J:8-136 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e3kdnJ2 J:137-444 TIM beta/alpha-barrel TIM barrels TIM barrels

Structural contacts of domain e3kdnE1 of H-group "RuBisCO, large subunit, small (N-terminal) domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3kdnI2 E:X,Y,Z->I:x,y,z TIM barrels Interaction Interface Pymol
e3kdnH1 E:X,Y,Z->H:x,y,z RuBisCO, large subunit, small (N-terminal) domain Interaction Interface Pymol
e3kdnH2 E:X,Y,Z->H:x,y,z TIM barrels Interaction Interface Pymol
e3kdnA2 E:x,y,z->A:X,Y,Z TIM barrels Interaction Interface Pymol
e3kdnC1 E:x,y,z->C:-X+1,Y-1/2,-Z+1 RuBisCO, large subunit, small (N-terminal) domain Interaction Interface Pymol
e3kdnJ1 E:x,y,z->J:-X+1,Y-1/2,-Z+1 RuBisCO, large subunit, small (N-terminal) domain Interaction Interface Pymol