Domain ID e3kdoC2

Download files:
  • A: a/b barrels
  • X: TIM beta/alpha-barrel
  • H: TIM barrels
  • T: TIM barrels
  • F: RuBisCO_large
UID: 000401983
Type: Automatic domain
Parent: e5rubA2
Range: C:137-444
Ligands: CAP MG
PDB: 3kdo
PDB Description: Ribulose bisphosphate carboxylase
UniProt: O93627
Species:

Structure of domain e3kdoC2

Domains in the same chain:

e3kdoC1 C:5-136 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e3kdoC2 C:137-444 TIM beta/alpha-barrel TIM barrels TIM barrels

Domains in the same PDB:

e3kdoA1 A:9-136 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e3kdoA2 A:137-444 TIM beta/alpha-barrel TIM barrels TIM barrels
e3kdoB1 B:7-136 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e3kdoB2 B:137-444 TIM beta/alpha-barrel TIM barrels TIM barrels
e3kdoC1 C:5-136 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e3kdoC2 C:137-444 TIM beta/alpha-barrel TIM barrels TIM barrels
e3kdoD1 D:8-136 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e3kdoD2 D:137-444 TIM beta/alpha-barrel TIM barrels TIM barrels
e3kdoE1 E:5-136 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e3kdoE2 E:137-444 TIM beta/alpha-barrel TIM barrels TIM barrels
e3kdoF1 F:8-136 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e3kdoF2 F:137-444 TIM beta/alpha-barrel TIM barrels TIM barrels
e3kdoG1 G:8-136 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e3kdoG2 G:137-444 TIM beta/alpha-barrel TIM barrels TIM barrels
e3kdoH1 H:7-136 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e3kdoH2 H:137-444 TIM beta/alpha-barrel TIM barrels TIM barrels
e3kdoI1 I:7-136 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e3kdoI2 I:137-444 TIM beta/alpha-barrel TIM barrels TIM barrels
e3kdoJ1 J:7-136 Alpha-beta plaits RuBisCO, large subunit, small (N-terminal) domain RuBisCO, large subunit, small (N-terminal) domain
e3kdoJ2 J:137-444 TIM beta/alpha-barrel TIM barrels TIM barrels

Structural contacts of domain e3kdoC2 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3kdoF1 C:X,Y,Z->F:x,y,z RuBisCO, large subunit, small (N-terminal) domain Interaction Interface Pymol
e3kdoF2 C:X,Y,Z->F:x,y,z TIM barrels Interaction Interface Pymol
e3kdoJ1 C:X,Y,Z->J:x,y,z RuBisCO, large subunit, small (N-terminal) domain Interaction Interface Pymol
e3kdoB2 C:x,y,z->B:X,Y,Z TIM barrels Interaction Interface Pymol
e3kdoB1 C:x,y,z->B:X,Y,Z RuBisCO, large subunit, small (N-terminal) domain Interaction Interface Pymol
e3kdoD2 C:X,Y,Z->D:x,y,z TIM barrels Interaction Interface Pymol
e3kdoG2 C:X-1,Y,Z->G:x,y,z TIM barrels Interaction Interface Pymol