Domain ID e3khhA5

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: IMS
UID: 001256055
Type: Automatic domain
Parent: e1t3nA4
Range: A:1-21,A:77-177
Ligands: CA DGT
PDB: 3khh
PDB Description: DNA polymerase IV
UniProt: Q97W02
Hsap BLAST neighbor: Q9UBZ9
Species:

Structure of domain e3khhA5

Domains in the same chain:

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e3khhA5 A:1-21,A:77-177 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3khhA7 A:22-76 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e3khhA6 A:178-240 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3khhA2 A:241-341 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Domains in the same PDB:

e3khhA5 A:1-21,A:77-177 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3khhA7 A:22-76 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e3khhA6 A:178-240 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3khhA2 A:241-341 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain
e3khhB5 B:1001-1021,B:1077-1177 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e3khhB7 B:1022-1076 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e3khhB6 B:1178-1240 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e3khhB2 B:1241-1341 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Structural contacts of domain e3khhA5 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e3khhA6 A:-X+1,Y-1/2,-Z->A:x,y,z SAM/DNA-glycosylase Interaction Interface Pymol
e3khhB2 A:x,y,z->B:X-1,Y,Z-1 Lesion bypass DNA polymerase (Y-family), little finger domain Interaction Interface Pymol